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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8065663   pentatricopeptide repeat-containing protein At3g53700, chloroplastic 
 zma-u.5   100383543   Pentatricopeptide repeat-containing protein chloroplastic 
 osa-u.5   4333379   pentatricopeptide repeat-containing protein At3g53700, chloroplastic 
 ath-u.5   MEE40   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100807932   pentatricopeptide repeat-containing protein At3g53700, chloroplastic 
 sly-u.5   101264147   pentatricopeptide repeat-containing protein At3g53700, chloroplastic 
 vvi-u.5   100256760   pentatricopeptide repeat-containing protein At3g53700, chloroplastic 
 ppo-u.5   7479044   pentatricopeptide repeat-containing protein At3g53700, chloroplastic 
 mtr-u.5   25484125   pentatricopeptide repeat-containing protein At3g53700, chloroplastic 

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Top 50 coexpressed genes to 8065663 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8065663 (sbi-r.1 coexpression data)

CoexMap"8065663"


sbiLOC8065663 | Entrez gene ID : 8065663    
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4172 genes)  IEA  
Protein XP_002464340.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  chlo_mito 5,  mito 2,  cyto_mito 1  (predict for XP_002464340.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_002464340.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8065663

.
zma-u.5
for
100383543

.
osa-u.5
for
4333379

.
ath-u.5
for
MEE40

.
gma-u.5
for
100807932

.
sly-u.5
for
101264147

.
vvi-u.5
for
100256760

.
ppo-u.5
for
7479044

.
mtr-u.5
for
25484125

.


Ortholog ID: 11694
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi bna bna sbi sot cit bdi nta nta
Symbol MEE40 LOC100807932 LOC101264147 LOC4333379 LOC100383543 LOC103863383 LOC100256760 LOC7479044 LOC25484125 LOC123113238 LOC123122746 LOC123397125 LOC107899292 LOC106440708 LOC106445775 LOC8065663 LOC102585429 LOC102608249 LOC100836179 LOC107816765 LOC107783828
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At3g53700, chloroplastic pentatricopeptide repeat-containing protein At3g53700, chloroplastic pentatricopeptide repeat-containing protein At3g53700, chloroplastic Pentatricopeptide repeat-containing protein chloroplastic pentatricopeptide repeat-containing protein At3g53700, chloroplastic pentatricopeptide repeat-containing protein At3g53700, chloroplastic pentatricopeptide repeat-containing protein At3g53700, chloroplastic pentatricopeptide repeat-containing protein At3g53700, chloroplastic pentatricopeptide repeat-containing protein At3g53700, chloroplastic pentatricopeptide repeat-containing protein At3g53700, chloroplastic pentatricopeptide repeat-containing protein At3g53700, chloroplastic pentatricopeptide repeat-containing protein At3g53700, chloroplastic pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like pentatricopeptide repeat-containing protein At3g53700, chloroplastic pentatricopeptide repeat-containing protein At3g53700, chloroplastic pentatricopeptide repeat-containing protein At3g53700, chloroplastic pentatricopeptide repeat-containing protein At3g53700, chloroplastic pentatricopeptide repeat-containing protein At3g53700, chloroplastic uncharacterized LOC107816765 uncharacterized LOC107783828
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 4
tae03010 Ribosome 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 2
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00220 Arginine biosynthesis 2
cit00240 Pyrimidine metabolism 2
cit00250 Alanine, aspartate and glutamate metabolism 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824537 100807932 101264147 4333379 100383543 103863383 100256760 7479044 25484125 123113238 123122746 123397125 107899292 106440708 106445775 8065663 102585429 102608249 100836179 107816765 107783828
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