ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8071965	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
zma-u.5	100193822	Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
zma-u.5	100273853	putative H/ACA ribonucleoprotein complex subunit family protein
osa-u.5	4350782	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
tae-r.2	123065747	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
tae-r.2	123079348	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
tae-r.2	123086038	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
hvu-r.1	123448556	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
bdi-r.1	100830464	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
ath-u.5	AT3G03920	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein
gma-u.5	100799823	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
gma-u.5	100788981	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
sly-u.5	101246000	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
bra-r.6	103828224	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
bra-r.6	103851163	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
bra-r.6	103856285	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
vvi-u.5	100245323	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
ppo-u.5	7489670	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
ppo-u.5	18108236	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
mtr-u.5	25498984	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
ghi-r.1	107930877	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
ghi-r.1	107962356	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
ghi-r.1	107898138	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
bna-r.1	106386550	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
bna-r.1	106432496	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
bna-r.1	106379219	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
sot-r.1	102586015	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
cit-r.1	102619891	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
nta-r.1	107762965	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
nta-r.1	107778989	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
nta-r.1	107805678	H/ACA ribonucleoprotein complex subunit 1-like protein 2
cre-r.1	CHLRE_13g567850v5	uncharacterized protein

Top 50 coexpressed genes to 8071965 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8071965 (sbi-r.1 coexpression data)

CoexMap"8071965"

[Cytoscape]

Annotation

functional annotation

KEGG

sbi03008 [list] [network] Ribosome biogenesis in eukaryotes (91 genes)

GO BP

GO:0000454 [list] [network] snoRNA guided rRNA pseudouridine synthesis	(1 genes)	IEA
GO:0042254 [list] [network] ribosome biogenesis	(293 genes)	IEA

GO CC

GO:0031429 [list] [network] box H/ACA snoRNP complex

(8 genes)

IEA

GO MF

GO:0034513 [list] [network] box H/ACA snoRNA binding

(5 genes)

IEA

Protein

XP_002449746.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, mito 3, chlo 1, cyto 1, cyto_mito 1, mito_plas 1

(predict for XP_002449746.1)

Subcellular
localization
TargetP

mito 6, other 6

(predict for XP_002449746.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8071965	zma-u.5 for 100193822	zma-u.5 for 100273853	osa-u.5 for 4350782	tae-r.2 for 123065747	tae-r.2 for 123079348	tae-r.2 for 123086038	hvu-r.1 for 123448556	bdi-r.1 for 100830464	ath-u.5 for AT3G03920	gma-u.5 for 100799823	gma-u.5 for 100788981	sly-u.5 for 101246000	bra-r.6 for 103828224	bra-r.6 for 103851163	bra-r.6 for 103856285	vvi-u.5 for 100245323	ppo-u.5 for 7489670	ppo-u.5 for 18108236	mtr-u.5 for 25498984	ghi-r.1 for 107930877	ghi-r.1 for 107962356	ghi-r.1 for 107898138	bna-r.1 for 106386550	bna-r.1 for 106432496	bna-r.1 for 106379219	sot-r.1 for 102586015	cit-r.1 for 102619891	nta-r.1 for 107762965	nta-r.1 for 107778989	nta-r.1 for 107805678	cre-r.1 for CHLRE_13g567850v5

Ortholog

Ortholog ID: 4911

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

putative H/ACA ribonucleoprotein complex subunit 1-like protein 1

Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1

putative H/ACA ribonucleoprotein complex subunit family protein

putative H/ACA ribonucleoprotein complex subunit 1-like protein 1

H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein

putative H/ACA ribonucleoprotein complex subunit 1-like protein 1

H/ACA ribonucleoprotein complex subunit 1-like protein 2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	6
sbi03008	Ribosome biogenesis in eukaryotes	2
sbi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	3
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	7
tae03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	9
tae03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	6
tae03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	6
hvu03008	Ribosome biogenesis in eukaryotes	4
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	8
bdi03040	Spliceosome	2
bdi03010	Ribosome	2
bdi00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	6
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	8
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	5
gma03008	Ribosome biogenesis in eukaryotes	5
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	8
sly03010	Ribosome	7
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	6
bra03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	5
bra03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	11
ppo03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	10
ppo03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	4
mtr03010	Ribosome	3
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4
ghi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4
ghi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4
ghi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	13
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	12
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	6
bna03018	RNA degradation	2
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	6
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta03008	Ribosome biogenesis in eukaryotes	4
nta03082	ATP-dependent chromatin remodeling	2
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	5
nta03082	ATP-dependent chromatin remodeling	2
nta03010	Ribosome	2
nta03040	Spliceosome	2
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	4
nta03040	Spliceosome	4
nta03082	ATP-dependent chromatin remodeling	2
nta03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	8

Expression

Expression pattern

Entrez Gene ID^*

8071965

100193822

100273853

4350782

123065747

123091807

123097243

123448556

100830464

821062

100799823

100788981

101246000

103828224

103851163

103856285

100245323

7489670

18108236

25498984

107962356

107898138

107894589

106386550

106433072

106445315

102586015

102619891

107762965

107778989

107805678

66055923

The preparation time of this page was 0.2 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	2	1	3	1	1	1	2	1	3	1	2	1	3	3	1	1	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8071965 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8071965 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**