ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8072895	phototropin-1A
sbi-r.1	8069866	phototropin-2
zma-u.5	100281086	phototropin-1
zma-u.5	541663	blue-light receptor phototropin 1
osa-u.5	4351240	phototropin-1A-like
osa-u.5	4349531	phototropin-1B-like
osa-u.5	4335426	phototropin-2-like
tae-r.2	123188951	phototropin-2
tae-r.2	123045205	phototropin-2
tae-r.2	123053040	phototropin-2
hvu-r.1	123426430	phototropin-2-like
hvu-r.1	123453041	phototropin-1A
bdi-r.1	100842084	phototropin-1A
bdi-r.1	100844338	phototropin-2
ath-u.5	PHOT1	phototropin 1
ath-u.5	PHOT2	phototropin 2
gma-u.5	100817565	phototropin-1
gma-u.5	100820096	phototropin-2
gma-u.5	100804783	phototropin-2
sly-u.5	PHOT1	phototropin-1
sly-u.5	PHOT2	phototropin-2
bra-r.6	103873605	phototropin-1
bra-r.6	103851659	phototropin-2
bra-r.6	103845248	phototropin-2
vvi-u.5	100262213	phototropin-1
vvi-u.5	100241765	phototropin-2
ppo-u.5	18102228	phototropin-2
ppo-u.5	18098184	phototropin-2
ppo-u.5	7467655	phototropin-1
mtr-u.5	11445312	phototropin-2
mtr-u.5	11427766	phototropin-1
mtr-u.5	11408033	phototropin-1
ghi-r.1	107959067	phototropin-1
ghi-r.1	107950311	phototropin-1
ghi-r.1	107940996	phototropin-2
bna-r.1	106420452	phototropin-2
bna-r.1	106387174	phototropin-2
bna-r.1	106347649	phototropin-1-like
sot-r.1	102597308	phototropin-2
sot-r.1	102603264	phototropin-1
cit-r.1	102626333	phototropin-2
cit-r.1	102610634	phototropin-1
nta-r.1	107797310	phototropin-1
nta-r.1	107762531	phototropin-1
nta-r.1	107764484	phototropin-2-like
cre-r.1	CHLRE_03g199000v5	uncharacterized protein

Top 50 coexpressed genes to 8072895 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8072895 (sbi-r.1 coexpression data)

CoexMap""

[Cytoscape]

Annotation

functional annotation

Function

phototropin-1A

KEGG

GO BP

GO:0006468 [list] [network] protein phosphorylation

(1208 genes)

IEA

GO CC

GO:0005886 [list] [network] plasma membrane	(952 genes)	IEA
GO:0005634 [list] [network] nucleus	(2977 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(4816 genes)	IEA

GO MF

GO:0004674 [list] [network] protein serine/threonine kinase activity	(378 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2084 genes)	IEA

Protein

XP_002441654.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 8, nucl 1

(predict for XP_002441654.1)

Subcellular
localization
TargetP

other 4, mito 3

(predict for XP_002441654.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8072895	sbi-r.1 for 8069866	zma-u.5 for 100281086	zma-u.5 for 541663	osa-u.5 for 4351240	osa-u.5 for 4349531	osa-u.5 for 4335426	tae-r.2 for 123188951	tae-r.2 for 123045205	tae-r.2 for 123053040	hvu-r.1 for 123426430	hvu-r.1 for 123453041	bdi-r.1 for 100842084	bdi-r.1 for 100844338	ath-u.5 for PHOT1	ath-u.5 for PHOT2	gma-u.5 for 100817565	gma-u.5 for 100820096	gma-u.5 for 100804783	sly-u.5 for PHOT1	sly-u.5 for PHOT2	bra-r.6 for 103873605	bra-r.6 for 103851659	bra-r.6 for 103845248	vvi-u.5 for 100262213	vvi-u.5 for 100241765	ppo-u.5 for 18102228	ppo-u.5 for 18098184	ppo-u.5 for 7467655	mtr-u.5 for 11445312	mtr-u.5 for 11427766	mtr-u.5 for 11408033	ghi-r.1 for 107959067	ghi-r.1 for 107950311	ghi-r.1 for 107940996	bna-r.1 for 106420452	bna-r.1 for 106387174	bna-r.1 for 106347649	sot-r.1 for 102597308	sot-r.1 for 102603264	cit-r.1 for 102626333	cit-r.1 for 102610634	nta-r.1 for 107797310	nta-r.1 for 107762531	nta-r.1 for 107764484	cre-r.1 for CHLRE_03g199000v5

Please wait a moment.

Ortholog

Ortholog ID: 2479

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

PHOT1

PHOT2

LOC100817565

LOC100820096

LOC100776796

PHOT1

PHOT2

Function^*

phototropin-1A

phototropin-2

phototropin-1

blue-light receptor phototropin 1

phototropin-1A-like

phototropin-1B-like

phototropin-2-like

phototropin-2

phototropin-1A

phototropin-2-like

phototropin-1A

phototropin-2

phototropin 1

phototropin 2

phototropin-1

phototropin-2

phototropin-1

phototropin-2

phototropin-1

phototropin-2

phototropin-1

phototropin-2

phototropin-1

phototropin-2

phototropin-1

phototropin-2

phototropin-1-like

phototropin-2-like

phototropin-2

phototropin-1

phototropin-2

phototropin-1

phototropin-2-like

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00520	Amino sugar and nucleotide sugar metabolism	5
zma00511	Other glycan degradation	2
zma00600	Sphingolipid metabolism	2
zma00603	Glycosphingolipid biosynthesis - globo and isoglobo series	2
zma00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00904	Diterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00630	Glyoxylate and dicarboxylate metabolism	4
osa01200	Carbon metabolism	4
osa00260	Glycine, serine and threonine metabolism	2
osa00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00052	Galactose metabolism	3
tae00511	Other glycan degradation	3
tae00531	Glycosaminoglycan degradation	3
tae00600	Sphingolipid metabolism	3
tae00604	Glycosphingolipid biosynthesis - ganglio series	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	2
bdi00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00630	Glyoxylate and dicarboxylate metabolism	2
bdi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	10
sly00710	Carbon fixation by Calvin cycle	7
sly00010	Glycolysis / Gluconeogenesis	4
sly00030	Pentose phosphate pathway	4
sly00051	Fructose and mannose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00380	Tryptophan metabolism	3
bra00630	Glyoxylate and dicarboxylate metabolism	3
bra01200	Carbon metabolism	3
bra04016	MAPK signaling pathway - plant	3
bra04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00380	Tryptophan metabolism	2
bra04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	2
vvi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00630	Glyoxylate and dicarboxylate metabolism	4
ppo01200	Carbon metabolism	4
ppo00250	Alanine, aspartate and glutamate metabolism	3
ppo00260	Glycine, serine and threonine metabolism	3
ppo01210	2-Oxocarboxylic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00195	Photosynthesis	9
mtr00196	Photosynthesis - antenna proteins	6
mtr00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00908	Zeatin biosynthesis	3
ghi00920	Sulfur metabolism	2
ghi00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00260	Glycine, serine and threonine metabolism	4
ghi00630	Glyoxylate and dicarboxylate metabolism	4
ghi00670	One carbon pool by folate	4
ghi00785	Lipoic acid metabolism	4
ghi01200	Carbon metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01200	Carbon metabolism	3
sot00195	Photosynthesis	3
sot00630	Glyoxylate and dicarboxylate metabolism	2
sot00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00902	Monoterpenoid biosynthesis	3
cit04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit02010	ABC transporters	2
cit04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	3
nta04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00195	Photosynthesis	2
nta04712	Circadian rhythm - plant	2
nta00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	2
nta00620	Pyruvate metabolism	2
nta00710	Carbon fixation by Calvin cycle	2
nta01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04814	Motor proteins	2
cre03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

8072895

8069866

100281086

541663

4351240

4349531

4335426

123045205

123103254

123111444

123426430

123453041

100842084

100844338

823721

835926

100817565

100820096

100776796

100037733

100037494

103873605

103845248

103856710

100262213

100241765

18102228

18098184

7467655

11445312

11427766

11408033

107959067

107940996

107924054

106347649

106388363

106435600

102597308

102603264

102626333

102610634

107797310

107762531

107764484

5718965

The preparation time of this page was 0.2 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	2	3	3	2	2	2	3	2	3	2	3	3	3	3	2	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8072895 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8072895 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**