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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8073102   pre-mRNA-splicing factor SYF1 
 zma-u.5   100217127   Tetratricopeptide repeat (TPR)-like superfamily protein 
 zma-u.5   100384244   uncharacterized LOC100384244 
 osa-u.5   4344088   uncharacterized LOC4344088 
 ath-u.5   AT5G28740   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100810456   pre-mRNA-splicing factor SYF1 
 gma-u.5   100781026   pre-mRNA-splicing factor SYF1 
 sly-u.5   101268140   uncharacterized LOC101268140 
 vvi-u.5   100267056   uncharacterized LOC100267056 
 ppo-u.5   7490793   uncharacterized LOC7490793 
 mtr-u.5   11434840   pre-mRNA-splicing factor SYF1 

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Top 50 coexpressed genes to 8073102 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8073102 (sbi-r.1 coexpression data)

CoexMap"8073102"


sbiLOC8073102 | Entrez gene ID : 8073102      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 2 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03040 [list] [network] Spliceosome (208 genes)
GO BP
GO:0000349 [list] [network] generation of catalytic spliceosome for first transesterification step  (1 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (170 genes)  IEA  
GO CC
GO:0071007 [list] [network] U2-type catalytic step 2 spliceosome  (6 genes)  IEA  
GO:0071014 [list] [network] post-mRNA release spliceosomal complex  (12 genes)  IEA  
GO:0000974 [list] [network] Prp19 complex  (13 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (4172 genes)  IEA  
Protein XP_002463280.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  pero 3,  cyto 2,  extr 1,  E.R. 1  (predict for XP_002463280.1)
Subcellular
localization
TargetP
scret 7,  other 5  (predict for XP_002463280.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8073102

.
zma-u.5
for
100217127

.
zma-u.5
for
100384244

.
osa-u.5
for
4344088

.
ath-u.5
for
AT5G28740

.
gma-u.5
for
100810456

.
gma-u.5
for
100781026

.
sly-u.5
for
101268140

.
vvi-u.5
for
100267056

.
ppo-u.5
for
7490793

.
mtr-u.5
for
11434840

.


Ortholog ID: 7741
Species ath gma gma sly osa zma zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol AT5G28740 LOC100810456 LOC100781026 LOC101268140 LOC4344088 LOC100217127 LOC100384244 LOC103854624 LOC100267056 LOC7490793 LOC11434840 LOC123187745 LOC123051861 LOC123425030 LOC107913998 LOC107924019 LOC106367761 LOC106382496 CHLRE_12g513500v5 LOC8073102 LOC102595332 LOC102596412 LOC102624825 LOC100840289 LOC107819808 LOC107763122
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pre-mRNA-splicing factor SYF1 pre-mRNA-splicing factor SYF1 uncharacterized LOC101268140 uncharacterized LOC4344088 Tetratricopeptide repeat (TPR)-like superfamily protein uncharacterized LOC100384244 pre-mRNA-splicing factor SYF1 uncharacterized LOC100267056 uncharacterized LOC7490793 pre-mRNA-splicing factor SYF1 pre-mRNA-splicing factor SYF1 pre-mRNA-splicing factor SYF1 pre-mRNA-splicing factor SYF1 pre-mRNA-splicing factor SYF1 pre-mRNA-splicing factor SYF1 pre-mRNA-splicing factor SYF1-like pre-mRNA-splicing factor SYF1 uncharacterized protein pre-mRNA-splicing factor SYF1 uncharacterized LOC102595332 pre-mRNA-splicing factor SYF1 uncharacterized LOC102624825 pre-mRNA-splicing factor SYF1 uncharacterized LOC107819808 uncharacterized LOC107763122
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03015 mRNA surveillance pathway 3
gma03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 7
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 11
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 14
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 12
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
sot03082 ATP-dependent chromatin remodeling 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832986 100810456 100781026 101268140 4344088 100217127 100384244 103854624 100267056 7490793 11434840 123187745 123051861 123425030 107913998 107924019 106367761 106382496 5728536 8073102 102595332 102596412 102624825 100840289 107819808 107763122
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