Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G28740   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-r.7   AT5G28740   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.9   AT5G28740   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-e.2   AT5G28740   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.bio   AT5G28740   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.hor   AT5G28740   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.lig   AT5G28740   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.str   AT5G28740   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.tis   AT5G28740   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103854624   pre-mRNA-splicing factor SYF1 
 bna-r.1   106367761   pre-mRNA-splicing factor SYF1-like 
 bna-r.1   106382496   pre-mRNA-splicing factor SYF1 
 ghi-r.1   107924019   pre-mRNA-splicing factor SYF1 
 ghi-r.1   107913998   pre-mRNA-splicing factor SYF1 
 cit-r.1   102624825   uncharacterized LOC102624825 
 gma-u.5   100781026   pre-mRNA-splicing factor SYF1 
 gma-u.5   100810456   pre-mRNA-splicing factor SYF1 
 vvi-u.5   100267056   uncharacterized LOC100267056 
 ppo-u.5   7490793   uncharacterized LOC7490793 
 mtr-u.5   11434840   pre-mRNA-splicing factor SYF1 
 sly-u.5   101268140   uncharacterized LOC101268140 
 sot-r.1   102596412   pre-mRNA-splicing factor SYF1 
 sot-r.1   102595332   uncharacterized LOC102595332 
 nta-r.1   107819808   uncharacterized LOC107819808 
 nta-r.1   107763122   uncharacterized LOC107763122 
 osa-u.5   4344088   uncharacterized LOC4344088 
 zma-u.5   100217127   Tetratricopeptide repeat (TPR)-like superfamily protein 
 zma-u.5   100384244   uncharacterized LOC100384244 
 tae-r.2   123051861   pre-mRNA-splicing factor SYF1 
 tae-r.2   123043992   pre-mRNA-splicing factor SYF1 
 hvu-r.1   123425030   pre-mRNA-splicing factor SYF1 
 sbi-r.1   8073102   pre-mRNA-splicing factor SYF1 
 bdi-r.1   100840289   pre-mRNA-splicing factor SYF1 
 cre-r.1   CHLRE_12g513500v5   uncharacterized protein 

close


Top 50 coexpressed genes to AT5G28740 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to AT5G28740 (ath-u.5 coexpression data)

CoexMap"832986"


athAT5G28740 | Entrez gene ID : 832986      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 2 2 1 2 2 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (112 genes)  IMP  
GO CC
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_198226.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  chlo 1,  nucl 1  (predict for NP_198226.1)
Subcellular
localization
TargetP
other 9  (predict for NP_198226.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G28740
ath-r.7
for
AT5G28740
ath-m.9
for
AT5G28740
ath-e.2
for
AT5G28740
ath-m.4.bio
for
AT5G28740
ath-m.4.hor
for
AT5G28740
ath-m.4.lig
for
AT5G28740
ath-m.4.str
for
AT5G28740
ath-m.4.tis
for
AT5G28740
bra-r.6
for
103854624
bna-r.1
for
106367761
bna-r.1
for
106382496
ghi-r.1
for
107924019
ghi-r.1
for
107913998
cit-r.1
for
102624825
gma-u.5
for
100781026
gma-u.5
for
100810456
vvi-u.5
for
100267056
ppo-u.5
for
7490793
mtr-u.5
for
11434840
sly-u.5
for
101268140
sot-r.1
for
102596412
sot-r.1
for
102595332
nta-r.1
for
107819808
nta-r.1
for
107763122
osa-u.5
for
4344088
zma-u.5
for
100217127
zma-u.5
for
100384244
tae-r.2
for
123051861
tae-r.2
for
123043992
hvu-r.1
for
123425030
sbi-r.1
for
8073102
bdi-r.1
for
100840289
cre-r.1
for
CHLRE_12g513500v5


Ortholog ID: 7741
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot sot nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol AT5G28740 LOC103854624 LOC106367761 LOC106382496 LOC107924019 LOC107913998 LOC102624825 LOC100781026 LOC100810456 LOC100267056 LOC7490793 LOC11434840 LOC101268140 LOC102596412 LOC102595332 LOC107819808 LOC107763122 LOC4344088 LOC100217127 LOC100384244 LOC123051861 LOC123043992 LOC123187745 LOC123425030 LOC8073102 LOC100840289 CHLRE_12g513500v5
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pre-mRNA-splicing factor SYF1 pre-mRNA-splicing factor SYF1-like pre-mRNA-splicing factor SYF1 pre-mRNA-splicing factor SYF1 pre-mRNA-splicing factor SYF1 uncharacterized LOC102624825 pre-mRNA-splicing factor SYF1 pre-mRNA-splicing factor SYF1 uncharacterized LOC100267056 uncharacterized LOC7490793 pre-mRNA-splicing factor SYF1 uncharacterized LOC101268140 pre-mRNA-splicing factor SYF1 uncharacterized LOC102595332 uncharacterized LOC107819808 uncharacterized LOC107763122 uncharacterized LOC4344088 Tetratricopeptide repeat (TPR)-like superfamily protein uncharacterized LOC100384244 pre-mRNA-splicing factor SYF1 pre-mRNA-splicing factor SYF1 pre-mRNA-splicing factor SYF1 pre-mRNA-splicing factor SYF1 pre-mRNA-splicing factor SYF1 pre-mRNA-splicing factor SYF1 uncharacterized protein
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 14
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 12
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03015 mRNA surveillance pathway 3
gma03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 7
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
sot03082 ATP-dependent chromatin remodeling 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 11
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 9
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832986 103854624 106367761 106382496 107924019 107913998 102624825 100781026 100810456 100267056 7490793 11434840 101268140 102596412 102595332 107819808 107763122 4344088 100217127 100384244 123051861 123043992 123187745 123425030 8073102 100840289 5728536
The preparation time of this page was 0.2 [sec].