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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8076009   U1 small nuclear ribonucleoprotein A 
 zma-u.5   100277950   uncharacterized LOC100277950 
 osa-u.5   4337846   U1 small nuclear ribonucleoprotein A-like 
 ath-u.5   U1A   spliceosomal protein U1A 
 gma-u.5   100777062   U1 small nuclear ribonucleoprotein A 
 gma-u.5   100500002   putative spliceosomal protein U1A 
 sly-u.5   101244611   U1 small nuclear ribonucleoprotein A 
 vvi-u.5   100243572   U1 small nuclear ribonucleoprotein A 
 ppo-u.5   18109788   U1 small nuclear ribonucleoprotein A 
 ppo-u.5   7495243   U1 small nuclear ribonucleoprotein A 
 mtr-u.5   25499590   U1 small nuclear ribonucleoprotein A 
 mtr-u.5   25493023   U1 small nuclear ribonucleoprotein A 

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Top 50 coexpressed genes to 8076009 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8076009 (sbi-r.1 coexpression data)

CoexMap"8076009"


sbiLOC8076009 | Entrez gene ID : 8076009      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 2 1 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03040 [list] [network] Spliceosome (208 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (170 genes)  IEA  
GO CC
GO:0005685 [list] [network] U1 snRNP  (25 genes)  IEA  
GO MF
GO:0030619 [list] [network] U1 snRNA binding  (6 genes)  IEA  
Protein XP_002439317.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  nucl 2  (predict for XP_002439317.1)
Subcellular
localization
TargetP
other 9  (predict for XP_002439317.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8076009

.
zma-u.5
for
100277950

.
osa-u.5
for
4337846

.
ath-u.5
for
U1A

.
gma-u.5
for
100777062

.
gma-u.5
for
100500002

.
sly-u.5
for
101244611

.
vvi-u.5
for
100243572

.
ppo-u.5
for
18109788

.
ppo-u.5
for
7495243

.
mtr-u.5
for
25499590

.
mtr-u.5
for
25493023

.


Ortholog ID: 8433
Species ath gma gma sly osa zma bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol U1A LOC100500002 LOC100777062 LOC101244611 LOC4337846 LOC100277950 LOC103866362 LOC100243572 LOC7495243 LOC18109788 LOC25493023 LOC25499590 LOC123180562 LOC123191664 LOC123425889 LOC107946067 LOC107926893 LOC106450442 LOC106396058 LOC8076009 LOC102601989 LOC102610491 LOC100841222 LOC107769277 LOC107760078
Function* spliceosomal protein U1A putative spliceosomal protein U1A U1 small nuclear ribonucleoprotein A U1 small nuclear ribonucleoprotein A U1 small nuclear ribonucleoprotein A-like uncharacterized LOC100277950 U1 small nuclear ribonucleoprotein A U1 small nuclear ribonucleoprotein A U1 small nuclear ribonucleoprotein A U1 small nuclear ribonucleoprotein A U1 small nuclear ribonucleoprotein A U1 small nuclear ribonucleoprotein A U1 small nuclear ribonucleoprotein A U1 small nuclear ribonucleoprotein A U1 small nuclear ribonucleoprotein A U1 small nuclear ribonucleoprotein A U1 small nuclear ribonucleoprotein A U1 small nuclear ribonucleoprotein A-like U1 small nuclear ribonucleoprotein A U1 small nuclear ribonucleoprotein A U1 small nuclear ribonucleoprotein A-like U1 small nuclear ribonucleoprotein A U1 small nuclear ribonucleoprotein A U1 small nuclear ribonucleoprotein A-like U1 small nuclear ribonucleoprotein A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 5
ath03040 Spliceosome 3
ath03020 RNA polymerase 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 10
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 16
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
osa03013 Nucleocytoplasmic transport 2
osa03015 mRNA surveillance pathway 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03082 ATP-dependent chromatin remodeling 2
zma04120 Ubiquitin mediated proteolysis 2
zma03040 Spliceosome 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 15
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03010 Ribosome 3
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
ppo03040 Spliceosome 5
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 6
tae03040 Spliceosome 2
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 6
tae03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 3
bna03082 ATP-dependent chromatin remodeling 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 13
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
cit03040 Spliceosome 3
cit03013 Nucleocytoplasmic transport 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
bdi03015 mRNA surveillance pathway 4
bdi03013 Nucleocytoplasmic transport 3
bdi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 17
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 19
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819371 100500002 100777062 101244611 4337846 100277950 103866362 100243572 7495243 18109788 25493023 25499590 123180562 123191664 123425889 107946067 107926893 106450442 106396058 8076009 102601989 102610491 100841222 107769277 107760078
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