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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8076537   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 zma-u.5   103653105   uncharacterized LOC103653105 
 osa-u.5   4344628   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 ath-u.5   EMB3141   Pentatricopeptide repeat (PPR-like) superfamily protein 
 gma-u.5   100788188   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 gma-u.5   100784842   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 sly-u.5   101248795   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 vvi-u.5   100257575   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 ppo-u.5   7454710   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 mtr-u.5   25488604   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 

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Top 50 coexpressed genes to 8076537 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8076537 (sbi-r.1 coexpression data)

CoexMap"8076537"


sbiLOC8076537 | Entrez gene ID : 8076537      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (378 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (824 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1243 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4172 genes)  IEA  
Protein XP_002443831.1 [sequence] [blastp]
XP_021321110.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 4  (predict for XP_002443831.1)
chlo 6,  mito 4  (predict for XP_021321110.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_002443831.1)
chlo 7  (predict for XP_021321110.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8076537

.
zma-u.5
for
103653105

.
osa-u.5
for
4344628

.
ath-u.5
for
EMB3141

.
gma-u.5
for
100788188

.
gma-u.5
for
100784842

.
sly-u.5
for
101248795

.
vvi-u.5
for
100257575

.
ppo-u.5
for
7454710

.
mtr-u.5
for
25488604

.


Ortholog ID: 10989
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sbi cit bdi nta
Symbol EMB3141 LOC100784842 LOC100788188 LOC101248795 LOC4344628 LOC103653105 LOC103833090 LOC100257575 LOC7454710 LOC25488604 LOC123147428 LOC123164632 LOC123407099 LOC121211073 LOC107913420 LOC106353939 LOC106366386 LOC110437386 LOC8076537 LOC102611973 LOC100839922 LOC107780902
Function* Pentatricopeptide repeat (PPR-like) superfamily protein pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic uncharacterized LOC103653105 pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic-like pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic-like pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00620 Pyruvate metabolism 8
ath01200 Carbon metabolism 8
ath00010 Glycolysis / Gluconeogenesis 5
ath00785 Lipoic acid metabolism 5
ath00061 Fatty acid biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00620 Pyruvate metabolism 8
sly01200 Carbon metabolism 8
sly00785 Lipoic acid metabolism 7
sly00010 Glycolysis / Gluconeogenesis 6
sly00020 Citrate cycle (TCA cycle) 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00785 Lipoic acid metabolism 4
ppo01240 Biosynthesis of cofactors 4
ppo00620 Pyruvate metabolism 3
ppo01200 Carbon metabolism 3
ppo00061 Fatty acid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00062 Fatty acid elongation 3
mtr01040 Biosynthesis of unsaturated fatty acids 2
mtr01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00620 Pyruvate metabolism 14
bna01200 Carbon metabolism 14
bna00010 Glycolysis / Gluconeogenesis 8
bna00640 Propanoate metabolism 8
bna00061 Fatty acid biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00620 Pyruvate metabolism 14
bna01200 Carbon metabolism 14
bna00010 Glycolysis / Gluconeogenesis 8
bna00640 Propanoate metabolism 8
bna00061 Fatty acid biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03430 Mismatch repair 4
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03430 Mismatch repair 4
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04148 Efferocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835107 100784842 100788188 101248795 4344628 103653105 103833090 100257575 7454710 25488604 123147428 123164632 123407099 121211073 107913420 106353939 106366386 110437386 8076537 102611973 100839922 107780902
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