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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8080603   poly(A)-specific ribonuclease PARN-like 
 osa-u.5   4345682   poly(A)-specific ribonuclease PARN-like 
 tae-r.2   123119454   poly(A)-specific ribonuclease PARN-like 
 tae-r.2   123110467   poly(A)-specific ribonuclease PARN-like 
 tae-r.2   123102268   poly(A)-specific ribonuclease PARN-like 
 hvu-r.1   123398014   poly(A)-specific ribonuclease PARN-like 
 bdi-r.1   100841345   poly(A)-specific ribonuclease PARN-like 
 ath-u.5   AT3G25430   Polynucleotidyl transferase, ribonuclease H-like superfamily protein 
 gma-u.5   100803008   poly(A)-specific ribonuclease PARN-like 
 sly-u.5   101264368   poly(A)-specific ribonuclease PARN-like 
 bra-r.6   103828556   poly(A)-specific ribonuclease PARN-like 
 vvi-u.5   100855155   poly(A)-specific ribonuclease PARN-like 
 ppo-u.5   7464439   poly(A)-specific ribonuclease PARN-like 
 mtr-u.5   112416806   poly(A)-specific ribonuclease PARN-like 
 ghi-r.1   107922763   poly(A)-specific ribonuclease PARN-like 
 ghi-r.1   107912511   poly(A)-specific ribonuclease PARN-like 
 bna-r.1   106402671   poly(A)-specific ribonuclease PARN-like 
 bna-r.1   106366680   poly(A)-specific ribonuclease PARN-like 
 sot-r.1   102578752   poly(A)-specific ribonuclease PARN-like 
 cit-r.1   102621635   poly(A)-specific ribonuclease PARN-like 
 nta-r.1   107794392   poly(A)-specific ribonuclease PARN-like 
 nta-r.1   107775406   poly(A)-specific ribonuclease PARN-like 

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Top 50 coexpressed genes to 8080603 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8080603 (sbi-r.1 coexpression data)

CoexMap""


sbiLOC8080603 | Entrez gene ID : 8080603      
Species sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre zma
Paralog 1 1 3 1 1 1 1 1 1 1 1 1 2 2 1 1 2 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
Function poly(A)-specific ribonuclease PARN-like
KEGG sbi03018 [list] [network] RNA degradation (112 genes)
GO BP
GO CC
GO:0005737 [list] [network] cytoplasm  (4816 genes)  IEA  
GO MF
GO:0000175 [list] [network] 3'-5'-RNA exonuclease activity  (39 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1243 genes)  IEA  
Protein XP_002444414.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 3,  cysk 1,  cyto_nucl 1  (predict for XP_002444414.1)
Subcellular
localization
TargetP
mito 5,  other 3  (predict for XP_002444414.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8080603
osa-u.5
for
4345682
tae-r.2
for
123119454
tae-r.2
for
123110467
tae-r.2
for
123102268
hvu-r.1
for
123398014
bdi-r.1
for
100841345
ath-u.5
for
AT3G25430
gma-u.5
for
100803008
sly-u.5
for
101264368
bra-r.6
for
103828556
vvi-u.5
for
100855155
ppo-u.5
for
7464439
mtr-u.5
for
112416806
ghi-r.1
for
107922763
ghi-r.1
for
107912511
bna-r.1
for
106402671
bna-r.1
for
106366680
sot-r.1
for
102578752
cit-r.1
for
102621635
nta-r.1
for
107794392
nta-r.1
for
107775406

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Ortholog ID: 11687
Species sbi osa tae tae tae hvu bdi ath gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta
Symbol LOC8080603 LOC4345682 LOC123119454 LOC123110467 LOC123102268 LOC123398014 LOC100841345 AT3G25430 LOC100803008 LOC101264368 LOC103828556 LOC100855155 LOC7464439 LOC112416806 LOC107922763 LOC107912511 LOC106402671 LOC106366680 LOC102578752 LOC102621635 LOC107794392 LOC107775406
Function* poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like Polynucleotidyl transferase, ribonuclease H-like superfamily protein poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
bra03018 RNA degradation 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03015 mRNA surveillance pathway 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03015 mRNA surveillance pathway 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
bna03440 Homologous recombination 2
bna03450 Non-homologous end-joining 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
bna03440 Homologous recombination 2
bna03450 Non-homologous end-joining 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8080603 4345682 123119454 123110467 123102268 123398014 100841345 822127 100803008 101264368 103828556 100855155 7464439 112416806 107922763 107912511 106402671 106366680 102578752 102621635 107794392 107775406
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