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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8080603   poly(A)-specific ribonuclease PARN-like 
 osa-u.5   4345682   poly(A)-specific ribonuclease PARN-like 
 ath-u.5   AT3G25430   Polynucleotidyl transferase, ribonuclease H-like superfamily protein 
 gma-u.5   100803008   poly(A)-specific ribonuclease PARN-like 
 sly-u.5   101264368   poly(A)-specific ribonuclease PARN-like 
 vvi-u.5   100855155   poly(A)-specific ribonuclease PARN-like 
 ppo-u.5   7464439   poly(A)-specific ribonuclease PARN-like 
 mtr-u.5   112416806   poly(A)-specific ribonuclease PARN-like 

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Top 50 coexpressed genes to 8080603 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8080603 (sbi-r.1 coexpression data)

CoexMap"8080603"


sbiLOC8080603 | Entrez gene ID : 8080603      
Species sbi osa ath gma sly vvi ppo mtr hvu sot tae nta bra cit ghi zma bna bdi cre
Paralog 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03018 [list] [network] RNA degradation (112 genes)
GO BP
GO CC
GO:0005737 [list] [network] cytoplasm  (4816 genes)  IEA  
GO MF
GO:0000175 [list] [network] 3'-5'-RNA exonuclease activity  (39 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1243 genes)  IEA  
Protein XP_002444414.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 3,  cysk 1,  cyto_nucl 1  (predict for XP_002444414.1)
Subcellular
localization
TargetP
mito 5,  other 3  (predict for XP_002444414.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8080603

.
osa-u.5
for
4345682

.
ath-u.5
for
AT3G25430

.
gma-u.5
for
100803008

.
sly-u.5
for
101264368

.
vvi-u.5
for
100855155

.
ppo-u.5
for
7464439

.
mtr-u.5
for
112416806

.


Ortholog ID: 11687
Species ath gma sly osa bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT3G25430 LOC100803008 LOC101264368 LOC4345682 LOC103828556 LOC100855155 LOC7464439 LOC112416806 LOC123102268 LOC123110467 LOC123398014 LOC107912511 LOC107922763 LOC106402671 LOC106366680 LOC8080603 LOC102578752 LOC102621635 LOC100841345 LOC107775406 LOC107794392
Function* Polynucleotidyl transferase, ribonuclease H-like superfamily protein poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
bra03018 RNA degradation 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03015 mRNA surveillance pathway 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03015 mRNA surveillance pathway 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
bna03440 Homologous recombination 2
bna03450 Non-homologous end-joining 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
bna03440 Homologous recombination 2
bna03450 Non-homologous end-joining 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822127 100803008 101264368 4345682 103828556 100855155 7464439 112416806 123102268 123110467 123398014 107912511 107922763 106402671 106366680 8080603 102578752 102621635 100841345 107775406 107794392
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