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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8082290   probable E3 ubiquitin-protein ligase RHC1A 
 zma-u.5   100283413   putative E3 ubiquitin-protein ligase RHC1A 
 osa-u.5   4332849   probable E3 ubiquitin-protein ligase RHC1A 
 ath-u.5   RHC1A   RING-H2 finger C1A 
 ath-u.5   AT3G56580   RING/U-box superfamily protein 
 gma-u.5   100819514   E3 ubiquitin-protein ligase RZF1 
 gma-u.5   100813674   probable E3 ubiquitin-protein ligase RHC1A 
 gma-u.5   100787523   probable E3 ubiquitin-protein ligase RHC1A 
 sly-u.5   101254413   probable E3 ubiquitin-protein ligase RHC1A 
 vvi-u.5   100251284   probable E3 ubiquitin-protein ligase RHC1A 
 vvi-u.5   100265395   probable E3 ubiquitin-protein ligase RHC1A 
 ppo-u.5   7495674   probable E3 ubiquitin-protein ligase RHC1A 
 ppo-u.5   7458900   probable E3 ubiquitin-protein ligase RHC1A 
 mtr-u.5   25483287   probable E3 ubiquitin-protein ligase RHC1A 
 mtr-u.5   25480121   probable E3 ubiquitin-protein ligase RHC1A 
 mtr-u.5   11431832   probable E3 ubiquitin-protein ligase RHC1A 

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Top 50 coexpressed genes to 8082290 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8082290 (sbi-r.1 coexpression data)

CoexMap"8082290"


sbiLOC8082290 | Entrez gene ID : 8082290      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 2 3 1 2 2 3 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016567 [list] [network] protein ubiquitination  (412 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (4816 genes)  IEA  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (192 genes)  IEA  
Protein XP_002465271.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto_nucl 4,  mito 1  (predict for XP_002465271.1)
Subcellular
localization
TargetP
mito 8,  other 3  (predict for XP_002465271.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8082290

.
zma-u.5
for
100283413

.
osa-u.5
for
4332849

.
ath-u.5
for
RHC1A

.
ath-u.5
for
AT3G56580

.
gma-u.5
for
100819514

.
gma-u.5
for
100813674

.
gma-u.5
for
100787523

.
sly-u.5
for
101254413

.
vvi-u.5
for
100251284

.
vvi-u.5
for
100265395

.
ppo-u.5
for
7495674

.
ppo-u.5
for
7458900

.
mtr-u.5
for
25483287

.
mtr-u.5
for
25480121

.
mtr-u.5
for
11431832

.


Ortholog ID: 5276
Species ath ath gma gma sly osa zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol RHC1A AT3G56580 LOC100787242 LOC100819514 LOC101254413 LOC4332849 LOC100283413 LOC103841559 LOC103857956 LOC100251284 LOC100265395 LOC7458900 LOC7495674 LOC25483287 LOC11431832 LOC123072085 LOC123063184 LOC123440732 LOC107891393 LOC107889346 LOC106368078 LOC106396023 LOC8082290 LOC102601784 LOC102615241 LOC100834834 LOC107775327 LOC107764362
Function* RING-H2 finger C1A RING/U-box superfamily protein probable E3 ubiquitin-protein ligase RHC1A E3 ubiquitin-protein ligase RZF1 probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A putative E3 ubiquitin-protein ligase RHC1A E3 ubiquitin-protein ligase RZF1 probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A E3 ubiquitin-protein ligase RZF1 probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A E3 ubiquitin-protein ligase RING1-like probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A putative E3 ubiquitin-protein ligase RHC1A putative E3 ubiquitin-protein ligase RHC1A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00541 Biosynthesis of various nucleotide sugars 2
gma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04626 Plant-pathogen interaction 2
gma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
zma00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 3
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00061 Fatty acid biosynthesis 2
tae01040 Biosynthesis of unsaturated fatty acids 2
tae01212 Fatty acid metabolism 2
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04145 Phagosome 2
bna04517 IgSF CAM signaling 2
bna04814 Motor proteins 2
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00360 Phenylalanine metabolism 3
bna00650 Butanoate metabolism 3
bna01200 Carbon metabolism 3
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 3
sbi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 3
bdi01240 Biosynthesis of cofactors 2
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818680 824825 100787242 100819514 101254413 4332849 100283413 103841559 103857956 100251284 100265395 7458900 7495674 25483287 11431832 123072085 123063184 123440732 107891393 107889346 106368078 106396023 8082290 102601784 102615241 100834834 107775327 107764362
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