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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8083208   zinc finger CCCH domain-containing protein 45 
 zma-u.5   103626282   zinc finger CCCH domain-containing protein 45 
 zma-u.5   103629640   zinc finger CCCH domain-containing protein 45 
 osa-u.5   4341840   zinc finger CCCH domain-containing protein 45-like 
 ath-u.5   CPSF30   cleavage and polyadenylation specificity factor 30 
 gma-u.5   100802826   30-kDa cleavage and polyadenylation specificity factor 30 
 gma-u.5   100787159   30-kDa cleavage and polyadenylation specificity factor 30 
 sly-u.5   101263950   30-kDa cleavage and polyadenylation specificity factor 30 
 sly-u.5   101254355   30-kDa cleavage and polyadenylation specificity factor 30 
 vvi-u.5   100253258   30-kDa cleavage and polyadenylation specificity factor 30 
 ppo-u.5   7483632   30-kDa cleavage and polyadenylation specificity factor 30 
 ppo-u.5   7487514   30-kDa cleavage and polyadenylation specificity factor 30 
 mtr-u.5   25486300   30-kDa cleavage and polyadenylation specificity factor 30 

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Top 50 coexpressed genes to 8083208 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8083208 (sbi-r.1 coexpression data)

CoexMap"8083208"


sbiLOC8083208 | Entrez gene ID : 8083208      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 2 1 1 2 2 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03015 [list] [network] mRNA surveillance pathway (120 genes)
GO BP
GO:0048024 [list] [network] regulation of mRNA splicing, via spliceosome  (19 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (170 genes)  IEA  
GO CC
GO:0005654 [list] [network] nucleoplasm  (211 genes)  IEA  
GO MF
GO:1990247 [list] [network] N6-methyladenosine-containing RNA reader activity  (1 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (267 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (2038 genes)  IEA  
Protein XP_002437445.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  chlo 1,  plas 1,  vacu 1,  chlo_mito 1  (predict for XP_002437445.1)
Subcellular
localization
TargetP
other 9  (predict for XP_002437445.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8083208

.
zma-u.5
for
103626282

.
zma-u.5
for
103629640

.
osa-u.5
for
4341840

.
ath-u.5
for
CPSF30

.
gma-u.5
for
100802826

.
gma-u.5
for
100787159

.
sly-u.5
for
101263950

.
sly-u.5
for
101254355

.
vvi-u.5
for
100253258

.
ppo-u.5
for
7483632

.
ppo-u.5
for
7487514

.
mtr-u.5
for
25486300

.


Ortholog ID: 7055
Species ath gma sly sly osa zma zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol CPSF30 LOC100802826 LOC101263950 LOC101254355 LOC4341840 LOC103626282 LOC103629640 LOC103835212 LOC100253258 LOC7487514 LOC7483632 LOC25486300 LOC123149073 LOC123157286 LOC123407783 LOC107928461 LOC107945204 LOC106442385 LOC106361574 CHLRE_24g755647v5 LOC8083208 LOC102580551 LOC102591572 LOC102629136 LOC100837853 LOC107763220 LOC107806003
Function* cleavage and polyadenylation specificity factor 30 30-kDa cleavage and polyadenylation specificity factor 30 30-kDa cleavage and polyadenylation specificity factor 30 30-kDa cleavage and polyadenylation specificity factor 30 zinc finger CCCH domain-containing protein 45-like zinc finger CCCH domain-containing protein 45 zinc finger CCCH domain-containing protein 45 30-kDa cleavage and polyadenylation specificity factor 30 30-kDa cleavage and polyadenylation specificity factor 30 30-kDa cleavage and polyadenylation specificity factor 30 30-kDa cleavage and polyadenylation specificity factor 30 30-kDa cleavage and polyadenylation specificity factor 30 zinc finger CCCH domain-containing protein 45 zinc finger CCCH domain-containing protein 45 zinc finger CCCH domain-containing protein 45 30-kDa cleavage and polyadenylation specificity factor 30 30-kDa cleavage and polyadenylation specificity factor 30 30-kDa cleavage and polyadenylation specificity factor 30 30-kDa cleavage and polyadenylation specificity factor 30 uncharacterized protein zinc finger CCCH domain-containing protein 45 30-kDa cleavage and polyadenylation specificity factor 30-like 30-kDa cleavage and polyadenylation specificity factor 30-like 30-kDa cleavage and polyadenylation specificity factor 30 zinc finger CCCH domain-containing protein 45 30-kDa cleavage and polyadenylation specificity factor 30 30-kDa cleavage and polyadenylation specificity factor 30
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03015 mRNA surveillance pathway 2
gma03250 Viral life cycle - HIV-1 2
gma00270 Cysteine and methionine metabolism 2
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03015 mRNA surveillance pathway 4
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
vvi03040 Spliceosome 3
vvi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
hvu03013 Nucleocytoplasmic transport 3
hvu03015 mRNA surveillance pathway 3
hvu03022 Basal transcription factors 2
hvu03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 8
ghi03015 mRNA surveillance pathway 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 8
ghi03015 mRNA surveillance pathway 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi03015 mRNA surveillance pathway 2
sbi03018 RNA degradation 2
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 6
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
cit04141 Protein processing in endoplasmic reticulum 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 3
nta03250 Viral life cycle - HIV-1 3
nta03040 Spliceosome 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839925 100802826 101263950 101254355 4341840 103626282 103629640 103835212 100253258 7487514 7483632 25486300 123149073 123157286 123407783 107928461 107945204 106442385 106361574 66057308 8083208 102580551 102591572 102629136 100837853 107763220 107806003
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