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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8083273   pentatricopeptide repeat-containing protein At1g76280 
 zma-u.5   103632892   pentatricopeptide repeat-containing protein At1g76280 
 osa-u.5   9268732   pentatricopeptide repeat-containing protein At1g76280 
 ath-u.5   AT1G76280   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100780147   pentatricopeptide repeat-containing protein At1g76280 
 sly-u.5   101256379   pentatricopeptide repeat-containing protein At1g76280 
 vvi-u.5   100262486   pentatricopeptide repeat-containing protein At1g76280 
 ppo-u.5   7487063   pentatricopeptide repeat-containing protein At1g76280 
 mtr-u.5   11412652   pentatricopeptide repeat-containing protein At1g76280 

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Top 50 coexpressed genes to 8083273 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8083273 (sbi-r.1 coexpression data)

CoexMap"8083273"


sbiLOC8083273 | Entrez gene ID : 8083273    
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4172 genes)  IEA  
Protein XP_021309490.1 [sequence] [blastp]
XP_021309491.1 [sequence] [blastp]
XP_021309492.1 [sequence] [blastp]
XP_021309493.1 [sequence] [blastp]
XP_021309494.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  chlo 3  (predict for XP_021309490.1)
mito 6,  chlo_mito 5,  chlo 2  (predict for XP_021309491.1)
mito 6,  chlo_mito 5,  chlo 3  (predict for XP_021309492.1)
cyto 6,  nucl 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for XP_021309493.1)
cyto 6,  nucl 2,  chlo 1,  vacu 1,  cysk 1  (predict for XP_021309494.1)
Subcellular
localization
TargetP
mito 7,  chlo 4  (predict for XP_021309490.1)
mito 7,  chlo 5  (predict for XP_021309491.1)
mito 7,  chlo 4  (predict for XP_021309492.1)
other 8  (predict for XP_021309493.1)
other 8  (predict for XP_021309494.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8083273

.
zma-u.5
for
103632892

.
osa-u.5
for
9268732

.
ath-u.5
for
AT1G76280

.
gma-u.5
for
100780147

.
sly-u.5
for
101256379

.
vvi-u.5
for
100262486

.
ppo-u.5
for
7487063

.
mtr-u.5
for
11412652

.


Ortholog ID: 11136
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi bdi nta
Symbol AT1G76280 LOC100780147 LOC101256379 LOC9268732 LOC103632892 LOC103832078 LOC100262486 LOC7487063 LOC11412652 LOC123088138 LOC123098773 LOC123449699 LOC107917965 LOC107922064 LOC106421522 LOC106402420 LOC8083273 LOC102593541 LOC102607024 LOC100832298 LOC100824507 LOC107816207
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At1g76280 pentatricopeptide repeat-containing protein At1g76280 pentatricopeptide repeat-containing protein At1g76280 pentatricopeptide repeat-containing protein At1g76280 pentatricopeptide repeat-containing protein At1g76280 pentatricopeptide repeat-containing protein At1g76280 pentatricopeptide repeat-containing protein At1g76280 pentatricopeptide repeat-containing protein At1g76280 pentatricopeptide repeat-containing protein At1g76280 pentatricopeptide repeat-containing protein At1g76280 pentatricopeptide repeat-containing protein At1g76280 pentatricopeptide repeat-containing protein At1g76280 pentatricopeptide repeat-containing protein At1g76280 pentatricopeptide repeat-containing protein At1g76280 pentatricopeptide repeat-containing protein At1g76280-like pentatricopeptide repeat-containing protein At1g76280 pentatricopeptide repeat-containing protein At1g76280 pentatricopeptide repeat-containing protein At1g76280 pentatricopeptide repeat-containing protein At1g76280 pentatricopeptide repeat-containing protein At1g76280 pentatricopeptide repeat-containing protein At1g76280
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 4
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 4
bra03040 Spliceosome 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
vvi03440 Homologous recombination 2
vvi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 3
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae00230 Purine metabolism 5
tae03008 Ribosome biogenesis in eukaryotes 2
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae03018 RNA degradation 3
tae03008 Ribosome biogenesis in eukaryotes 2
tae00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 3
ghi04518 Integrin signaling 3
ghi04142 Lysosome 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 3
ghi04518 Integrin signaling 3
ghi04142 Lysosome 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 3
sbi03018 RNA degradation 3
sbi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 4
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843961 100780147 101256379 9268732 103632892 103832078 100262486 7487063 11412652 123088138 123098773 123449699 107917965 107922064 106421522 106402420 8083273 102593541 102607024 100832298 100824507 107816207
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