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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8085804   replication protein A 14 kDa subunit 
 zma-u.5   100126965   uncharacterized LOC100126965 
 zma-u.5   100283481   uncharacterized LOC100283481 
 osa-u.5   4327706   replication protein A 14 kDa subunit-like 
 tae-r.2   123078093   replication protein A 14 kDa subunit 
 tae-r.2   123060954   replication protein A 14 kDa subunit 
 tae-r.2   123061021   replication protein A 14 kDa subunit 
 hvu-r.1   123443383   replication protein A 14 kDa subunit-like 
 hvu-r.1   123443446   replication protein A 14 kDa subunit-like 
 bdi-r.1   100836018   replication protein A 14 kDa subunit 
 bdi-r.1   100829480   replication protein A 14 kDa subunit 
 ath-u.5   AT3G52630   Nucleic acid-binding, OB-fold-like protein 
 ath-u.5   AT4G18590   Nucleic acid-binding, OB-fold-like protein 
 gma-u.5   100781484   replication protein A 14 kDa subunit B 
 gma-u.5   100306641   uncharacterized LOC100306641 
 gma-u.5   100306197   uncharacterized LOC100306197 
 sly-u.5   101252714   replication protein A 14 kDa subunit B 
 sly-u.5   101255747   replication protein A 14 kDa subunit B-like 
 bra-r.6   103856623   replication protein A 14 kDa subunit B 
 vvi-u.5   100244193   replication protein A 14 kDa subunit B 
 vvi-u.5   100264936   replication protein A 14 kDa subunit B 
 ppo-u.5   18100634   replication protein A 14 kDa subunit A 
 ppo-u.5   7492250   replication protein A 14 kDa subunit A 
 mtr-u.5   11433064   replication protein A 14 kDa subunit B 
 mtr-u.5   25485575   replication protein A 14 kDa subunit B 
 mtr-u.5   25485573   replication protein A 14 kDa subunit B 
 ghi-r.1   107951716   replication protein A 14 kDa subunit B 
 bna-r.1   106375614   replication protein A 14 kDa subunit B 
 bna-r.1   106425549   replication protein A 14 kDa subunit B 
 sot-r.1   102606244   replication protein A 14 kDa subunit B-like 
 sot-r.1   102600870   replication protein A 14 kDa subunit B 
 cit-r.1   102619411   replication protein A 14 kDa subunit B 
 nta-r.1   107773701   replication protein A 14 kDa subunit B 
 nta-r.1   107802353   replication protein A 14 kDa subunit B-like 
 nta-r.1   107781065   replication protein A 14 kDa subunit B 

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Top 50 coexpressed genes to 8085804 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8085804 (sbi-r.1 coexpression data)

CoexMap"8085804"


sbiLOC8085804 | Entrez gene ID : 8085804    
Species sbi zma osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 2 1 3 2 2 2 3 2 1 2 2 3 1 2 2 1 3 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03030 [list] [network] DNA replication (53 genes)
sbi03420 [list] [network] Nucleotide excision repair (89 genes)
sbi03430 [list] [network] Mismatch repair (39 genes)
sbi03440 [list] [network] Homologous recombination (62 genes)
sbi03460 [list] [network] Fanconi anemia pathway (45 genes)
GO BP
GO:0006260 [list] [network] DNA replication  (148 genes)  IEA  
GO:0006310 [list] [network] DNA recombination  (163 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (318 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2977 genes)  IEA  
GO MF
GO:0003677 [list] [network] DNA binding  (1849 genes)  IEA  
Protein XP_021310906.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  cyto 4,  nucl 1  (predict for XP_021310906.1)
Subcellular
localization
TargetP
chlo 5,  other 4  (predict for XP_021310906.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8085804
zma-u.5
for
100126965
zma-u.5
for
100283481
osa-u.5
for
4327706
tae-r.2
for
123078093
tae-r.2
for
123060954
tae-r.2
for
123061021
hvu-r.1
for
123443383
hvu-r.1
for
123443446
bdi-r.1
for
100836018
bdi-r.1
for
100829480
ath-u.5
for
AT3G52630
ath-u.5
for
AT4G18590
gma-u.5
for
100781484
gma-u.5
for
100306641
gma-u.5
for
100306197
sly-u.5
for
101252714
sly-u.5
for
101255747
bra-r.6
for
103856623
vvi-u.5
for
100244193
vvi-u.5
for
100264936
ppo-u.5
for
18100634
ppo-u.5
for
7492250
mtr-u.5
for
11433064
mtr-u.5
for
25485575
mtr-u.5
for
25485573
ghi-r.1
for
107951716
bna-r.1
for
106375614
bna-r.1
for
106425549
sot-r.1
for
102606244
sot-r.1
for
102600870
cit-r.1
for
102619411
nta-r.1
for
107773701
nta-r.1
for
107802353
nta-r.1
for
107781065


Ortholog ID: 4751
Species sbi zma zma osa tae tae tae hvu hvu bdi bdi ath ath gma gma sly sly bra vvi vvi ppo ppo mtr mtr mtr ghi bna bna sot sot cit nta nta nta
Symbol LOC8085804 LOC100126965 LOC100283481 LOC4327706 LOC123061021 LOC123069552 LOC123078038 LOC123443383 LOC123443446 LOC100836018 LOC100829480 AT3G52630 AT4G18590 LOC100781484 LOC100306197 LOC101252714 LOC101255747 LOC103856623 LOC100244193 LOC100264936 LOC18100634 LOC7492250 LOC11433064 LOC25485575 LOC25485573 LOC107951716 LOC106375614 LOC106425549 LOC102606244 LOC102600870 LOC102619411 LOC107773701 LOC107802353 LOC107781065
Function* replication protein A 14 kDa subunit uncharacterized LOC100126965 uncharacterized LOC100283481 replication protein A 14 kDa subunit-like replication protein A 14 kDa subunit replication protein A 14 kDa subunit replication protein A 14 kDa subunit replication protein A 14 kDa subunit-like replication protein A 14 kDa subunit-like replication protein A 14 kDa subunit replication protein A 14 kDa subunit Nucleic acid-binding, OB-fold-like protein Nucleic acid-binding, OB-fold-like protein replication protein A 14 kDa subunit B uncharacterized LOC100306197 replication protein A 14 kDa subunit B replication protein A 14 kDa subunit B-like replication protein A 14 kDa subunit B replication protein A 14 kDa subunit B replication protein A 14 kDa subunit B replication protein A 14 kDa subunit A replication protein A 14 kDa subunit A replication protein A 14 kDa subunit B replication protein A 14 kDa subunit B replication protein A 14 kDa subunit B replication protein A 14 kDa subunit B replication protein A 14 kDa subunit B replication protein A 14 kDa subunit B replication protein A 14 kDa subunit B-like replication protein A 14 kDa subunit B replication protein A 14 kDa subunit B replication protein A 14 kDa subunit B replication protein A 14 kDa subunit B-like replication protein A 14 kDa subunit B
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03018 RNA degradation 2
zma03010 Ribosome 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 4
zma03010 Ribosome 2
zma03008 Ribosome biogenesis in eukaryotes 2
zma03420 Nucleotide excision repair 2
zma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03430 Mismatch repair 3
osa03440 Homologous recombination 3
osa03050 Proteasome 2
osa03030 DNA replication 2
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
tae03040 Spliceosome 6
tae03030 DNA replication 2
tae03420 Nucleotide excision repair 2
tae03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 13
tae03420 Nucleotide excision repair 6
tae03430 Mismatch repair 6
tae03440 Homologous recombination 6
tae03460 Fanconi anemia pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 14
tae03420 Nucleotide excision repair 5
tae03440 Homologous recombination 5
tae03430 Mismatch repair 4
tae03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 3
bdi03440 Homologous recombination 2
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03420 Nucleotide excision repair 3
bdi00190 Oxidative phosphorylation 2
bdi03010 Ribosome 2
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 5
ath03420 Nucleotide excision repair 4
ath03430 Mismatch repair 4
ath03440 Homologous recombination 4
ath03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 6
gma03420 Nucleotide excision repair 5
gma03430 Mismatch repair 5
gma00240 Pyrimidine metabolism 4
gma01232 Nucleotide metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 5
gma00240 Pyrimidine metabolism 5
gma01232 Nucleotide metabolism 5
gma03420 Nucleotide excision repair 4
gma03430 Mismatch repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 11
sly03420 Nucleotide excision repair 3
sly03430 Mismatch repair 3
sly00240 Pyrimidine metabolism 2
sly01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 6
sly00240 Pyrimidine metabolism 3
sly01232 Nucleotide metabolism 3
sly03420 Nucleotide excision repair 3
sly03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra03008 Ribosome biogenesis in eukaryotes 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 6
vvi03420 Nucleotide excision repair 4
vvi03410 Base excision repair 3
vvi03430 Mismatch repair 3
vvi00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
vvi03040 Spliceosome 2
vvi03420 Nucleotide excision repair 2
vvi03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 13
ppo03030 DNA replication 2
ppo03420 Nucleotide excision repair 2
ppo03430 Mismatch repair 2
ppo03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 15
ppo03008 Ribosome biogenesis in eukaryotes 3
ppo03030 DNA replication 2
ppo03420 Nucleotide excision repair 2
ppo03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 5
mtr03420 Nucleotide excision repair 5
mtr03010 Ribosome 5
mtr03430 Mismatch repair 3
mtr03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 5
mtr03420 Nucleotide excision repair 3
mtr03430 Mismatch repair 3
mtr03440 Homologous recombination 2
mtr03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 5
ghi03420 Nucleotide excision repair 5
ghi03430 Mismatch repair 5
ghi03410 Base excision repair 4
ghi03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 10
bna03030 DNA replication 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 14
bna03030 DNA replication 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
sot00230 Purine metabolism 2
sot00240 Pyrimidine metabolism 2
sot00480 Glutathione metabolism 2
sot01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 12
sot03420 Nucleotide excision repair 3
sot03430 Mismatch repair 3
sot03440 Homologous recombination 3
sot03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 7
cit03040 Spliceosome 5
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 11
nta03420 Nucleotide excision repair 3
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 8
nta03420 Nucleotide excision repair 8
nta03410 Base excision repair 6
nta03430 Mismatch repair 6
nta03440 Homologous recombination 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 6
nta03420 Nucleotide excision repair 6
nta03410 Base excision repair 4
nta03430 Mismatch repair 4
nta03440 Homologous recombination 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8085804 100126965 100283481 4327706 123061021 123069552 123078038 123443383 123443446 100836018 100829480 824429 827591 100781484 100306197 101252714 101255747 103856623 100244193 100264936 18100634 7492250 11433064 25485575 25485573 107951716 106375614 106425549 102606244 102600870 102619411 107773701 107802353 107781065
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