ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8086228	COBRA-like protein 3
sbi-r.1	8079018	COBRA-like protein 1
zma-u.5	100037800	brittle stalk-2-like protein 7
zma-u.5	541793	brittle stalk-2-like protein 3
zma-u.5	778435	brittle stalk 2
osa-u.5	4333114	COBRA-like protein 5
osa-u.5	4338658	COBRA-like protein 3
tae-r.2	123086798	COBRA-like protein 2
tae-r.2	123091177	COBRA-like protein 2
tae-r.2	123080161	COBRA-like protein 1
hvu-r.1	123452279	COBRA-like protein 3
hvu-r.1	123447814	COBRA-like protein 2
hvu-r.1	123442574	COBRA-like protein 5
bdi-r.1	100829029	COBRA-like protein 5
bdi-r.1	100823628	COBRA-like protein 1
bdi-r.1	100829328	COBRA-like protein 2
ath-u.5	COB	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
ath-u.5	COBL6	COBRA-like protein 6 precursor
ath-u.5	IRX6	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
gma-u.5	100815779	protein COBRA
gma-u.5	100811581	protein COBRA
gma-u.5	100815926	protein COBRA
sly-u.5	101260119	COBRA-like protein 4
sly-u.5	101260090	COBRA-like protein 6
sly-u.5	101253146	COBRA-like protein 4
bra-r.6	103875066	COBRA-like protein 2
bra-r.6	103836309	COBRA-like protein 6
bra-r.6	103849801	COBRA-like protein 2
vvi-u.5	100263436	protein COBRA
vvi-u.5	100263971	protein COBRA
ppo-u.5	7480591	COBRA-like protein 4
ppo-u.5	7480590	COBRA-like protein 2
mtr-u.5	25495418	COBRA-like protein 1
mtr-u.5	25495419	protein COBRA
ghi-r.1	107912686	COBRA-like protein 4
ghi-r.1	107910998	COBRA-like protein 1
bna-r.1	106432032	COBRA-like protein 4
bna-r.1	106411053	protein COBRA
bna-r.1	106410940	COBRA-like protein 2
sot-r.1	102600020	protein COBRA-like
sot-r.1	102598920	COBRA-like protein 4
sot-r.1	102590522	COBRA-like protein 4
cit-r.1	102609762	protein COBRA-like
cit-r.1	102610075	COBRA-like protein 4
nta-r.1	107800930	protein COBRA
nta-r.1	107768224	protein COBRA-like
nta-r.1	107763917	COBRA-like protein 6

Top 50 coexpressed genes to 8086228 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8086228 (sbi-r.1 coexpression data)

CoexMap"8086228"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0052324 [list] [network] plant-type cell wall cellulose biosynthetic process	(7 genes)	IEA
GO:0010215 [list] [network] cellulose microfibril organization	(10 genes)	IEA

GO CC

GO:0005886 [list] [network] plasma membrane

(952 genes)

IEA

GO MF

Protein

XP_002463861.1 [sequence] [blastp]

Subcellular
localization
wolf

extr 4, vacu 3, golg 3

(predict for XP_002463861.1)

Subcellular
localization
TargetP

scret 9

(predict for XP_002463861.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8086228	sbi-r.1 for 8079018	zma-u.5 for 100037800	zma-u.5 for 541793	zma-u.5 for 778435	osa-u.5 for 4333114	osa-u.5 for 4338658	tae-r.2 for 123086798	tae-r.2 for 123091177	tae-r.2 for 123080161	hvu-r.1 for 123452279	hvu-r.1 for 123447814	hvu-r.1 for 123442574	bdi-r.1 for 100829029	bdi-r.1 for 100823628	bdi-r.1 for 100829328	ath-u.5 for COB	ath-u.5 for COBL6	ath-u.5 for IRX6	gma-u.5 for 100815779	gma-u.5 for 100811581	gma-u.5 for 100815926	sly-u.5 for 101260119	sly-u.5 for 101260090	sly-u.5 for 101253146	bra-r.6 for 103875066	bra-r.6 for 103836309	bra-r.6 for 103849801	vvi-u.5 for 100263436	vvi-u.5 for 100263971	ppo-u.5 for 7480591	ppo-u.5 for 7480590	mtr-u.5 for 25495418	mtr-u.5 for 25495419	ghi-r.1 for 107912686	ghi-r.1 for 107910998	bna-r.1 for 106432032	bna-r.1 for 106411053	bna-r.1 for 106410940	sot-r.1 for 102600020	sot-r.1 for 102598920	sot-r.1 for 102590522	cit-r.1 for 102609762	cit-r.1 for 102610075	nta-r.1 for 107800930	nta-r.1 for 107768224	nta-r.1 for 107763917

Ortholog

Ortholog ID: 307

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

COB

COBL6

COBL2

Function^*

COBRA-like protein 5

COBRA-like protein 3

brittle stalk-2-like protein 3

brittle stalk-2-like protein 6

brittle stalk-2-like protein 4

COBRA-like protein 5

COBRA-like protein 6

COBRA-like protein 1

COBRA-like protein 3

COBRA-like protein 2

COBRA-like protein 6

COBRA-like protein 3

COBRA-like protein 1

COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family

COBRA-like protein 6 precursor

COBRA-like protein 2 precursor

protein COBRA

protein COBRA-like

COBRA-like protein 4-like

COBRA-like protein 4

protein COBRA-like

COBRA-like protein 6

COBRA-like protein 4

protein COBRA

COBRA-like protein 4

COBRA-like protein 2

COBRA-like protein 1

protein COBRA

COBRA-like protein 1

COBRA-like protein 2

COBRA-like protein 6

COBRA-like protein 4

protein COBRA-like

COBRA-like protein 4

protein COBRA-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00999	Biosynthesis of various plant secondary metabolites	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	3
ath04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00520	Amino sugar and nucleotide sugar metabolism	4
bra01250	Biosynthesis of nucleotide sugars	3
bra00053	Ascorbate and aldarate metabolism	2
bra01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00520	Amino sugar and nucleotide sugar metabolism	2
mtr01250	Biosynthesis of nucleotide sugars	2
mtr03008	Ribosome biogenesis in eukaryotes	2
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00051	Fructose and mannose metabolism	2
ghi00052	Galactose metabolism	2
ghi00500	Starch and sucrose metabolism	2
ghi00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00051	Fructose and mannose metabolism	2
ghi00052	Galactose metabolism	2
ghi00500	Starch and sucrose metabolism	2
ghi00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00520	Amino sugar and nucleotide sugar metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

8070042

8085923

541793

100037799

100037798

4333114

4343845

4343844

123188006

123128916

123105056

123447814

123429721

123403280

100823628

836213

837508

822697

100815926

100782876

100783410

101253146

101251844

112940047

103856152

103860552

100263436

100263971

100244586

7480591

7480590

25495418

25495419

107951886

107955737

106399754

106362383

106346245

102598920

102584372

102604326

102609762

102610075

107806738

107807502

107807501

The preparation time of this page was 0.2 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	3	2	3	3	3	3	3	3	3	2	2	2	2	3	3	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8086228 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8086228 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**