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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CRR3   chlororespiratory reduction 3 
 ath-r.7   CRR3   chlororespiratory reduction 3 
 ath-m.9   CRR3   chlororespiratory reduction 3 
 ath-e.2   CRR3   chlororespiratory reduction 3 
 ath-m.4.bio   CRR3   chlororespiratory reduction 3 
 ath-m.4.hor   CRR3   chlororespiratory reduction 3 
 ath-m.4.lig   CRR3   chlororespiratory reduction 3 
 ath-m.4.str   CRR3   chlororespiratory reduction 3 
 ath-m.4.tis   CRR3   chlororespiratory reduction 3 
 bra-r.6   103854057   probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic 
 bna-r.1   106401245   probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic 
 bna-r.1   106374776   probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic 
 bna-r.1   125587885   probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic 
 ghi-r.1   107941850   probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic 
 ghi-r.1   121202995   probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic 
 ghi-r.1   107948906   probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic 
 cit-r.1   102618097   probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic 
 gma-u.5   100810981   probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic 
 vvi-u.5   100250842   probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic 
 ppo-u.5   7459771   probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic 
 mtr-u.5   11424254   probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic 
 sly-u.5   101243784   uncharacterized LOC101243784 
 sot-r.1   102601753   probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic 
 nta-r.1   107789980   putative NAD(P)H dehydrogenase subunit CRR3, chloroplastic 
 nta-r.1   107772660   putative NAD(P)H dehydrogenase subunit CRR3, chloroplastic 
 nta-r.1   107767152   putative NAD(P)H dehydrogenase subunit CRR3, chloroplastic 
 osa-u.5   107275295   probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic 
 zma-u.5   100275885   putative NAD(P)H dehydrogenase subunit CRR3 chloroplastic 
 tae-r.2   123111667   probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic 
 tae-r.2   123121163   probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic 
 tae-r.2   123103463   probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic 
 hvu-r.1   123398489   probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic 
 sbi-r.1   8071883   probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic 
 bdi-r.1   100842901   probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic 

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Top 50 coexpressed genes to CRR3 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CRR3 (ath-u.5 coexpression data)

CoexMap"814688"


athCRR3 | Entrez gene ID : 814688      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 3 1 1 1 1 1 1 1 3 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009773 [list] [network] photosynthetic electron transport in photosystem I  (16 genes)  IEA TAS  
GO CC
GO:0010598 [list] [network] NAD(P)H dehydrogenase complex (plastoquinone)  (13 genes)  IEA NAS  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  IEA  
GO:0016020 [list] [network] membrane  (3740 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA ISM  
GO MF
Protein NP_001324709.1 [sequence] [blastp]
NP_565266.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  golg 1,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  mito_plas 1  (predict for NP_001324709.1)
chlo 6,  golg 1,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  mito_plas 1  (predict for NP_565266.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001324709.1)
chlo 9  (predict for NP_565266.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
CRR3
ath-r.7
for
CRR3
ath-m.9
for
CRR3
ath-e.2
for
CRR3
ath-m.4.bio
for
CRR3
ath-m.4.hor
for
CRR3
ath-m.4.lig
for
CRR3
ath-m.4.str
for
CRR3
ath-m.4.tis
for
CRR3
bra-r.6
for
103854057
bna-r.1
for
106401245
bna-r.1
for
106374776
bna-r.1
for
125587885
ghi-r.1
for
107941850
ghi-r.1
for
121202995
ghi-r.1
for
107948906
cit-r.1
for
102618097
gma-u.5
for
100810981
vvi-u.5
for
100250842
ppo-u.5
for
7459771
mtr-u.5
for
11424254
sly-u.5
for
101243784
sot-r.1
for
102601753
nta-r.1
for
107789980
nta-r.1
for
107772660
nta-r.1
for
107767152
osa-u.5
for
107275295
zma-u.5
for
100275885
tae-r.2
for
123111667
tae-r.2
for
123121163
tae-r.2
for
123103463
hvu-r.1
for
123398489
sbi-r.1
for
8071883
bdi-r.1
for
100842901


Ortholog ID: 8378
Species ath bra bna bna bna ghi ghi ghi cit gma vvi ppo mtr sly sot nta nta nta osa zma tae tae tae hvu sbi bdi
Symbol CRR3 LOC103854057 LOC106401245 LOC106374776 LOC125587885 LOC107941850 LOC121202995 LOC107948906 LOC102618097 LOC100810981 LOC100250842 LOC7459771 LOC11424254 LOC101243784 LOC102601753 LOC107789980 LOC107772660 LOC107767152 LOC107275295 LOC100275885 LOC123111667 LOC123121163 LOC123103463 LOC123398489 LOC8071883 LOC100842901
Function* chlororespiratory reduction 3 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic uncharacterized LOC101243784 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic putative NAD(P)H dehydrogenase subunit CRR3, chloroplastic putative NAD(P)H dehydrogenase subunit CRR3, chloroplastic putative NAD(P)H dehydrogenase subunit CRR3, chloroplastic probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic putative NAD(P)H dehydrogenase subunit CRR3 chloroplastic probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 3
bra00195 Photosynthesis 2
bra00260 Glycine, serine and threonine metabolism 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 2
sot00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00790 Folate biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00790 Folate biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00790 Folate biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00630 Glyoxylate and dicarboxylate metabolism 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03060 Protein export 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 814688 103854057 106401245 106374776 125587885 107941850 121202995 107948906 102618097 100810981 100250842 7459771 11424254 101243784 102601753 107789980 107772660 107767152 107275295 100275885 123111667 123121163 123103463 123398489 8071883 100842901
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