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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   ISPD   Nucleotide-diphospho-sugar transferases superfamily protein 
 ath-r.7   ISPD   Nucleotide-diphospho-sugar transferases superfamily protein 
 ath-m.9   ISPD   Nucleotide-diphospho-sugar transferases superfamily protein 
 ath-e.2   ISPD   Nucleotide-diphospho-sugar transferases superfamily protein 
 ath-m.4.bio   ISPD   Nucleotide-diphospho-sugar transferases superfamily protein 
 ath-m.4.hor   ISPD   Nucleotide-diphospho-sugar transferases superfamily protein 
 ath-m.4.lig   ISPD   Nucleotide-diphospho-sugar transferases superfamily protein 
 ath-m.4.str   ISPD   Nucleotide-diphospho-sugar transferases superfamily protein 
 ath-m.4.tis   ISPD   Nucleotide-diphospho-sugar transferases superfamily protein 
 bna-r.1   106380674   2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic-like 
 bna-r.1   125580067   2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic-like 
 ghi-r.1   121203055   2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 
 ghi-r.1   107901766   2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 
 cit-r.1   102612633   2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 
 gma-u.5   100817632   2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 
 vvi-u.5   100247263   2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 
 ppo-u.5   18098380   2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 
 mtr-u.5   25494363   2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 
 sly-u.5   101251334   2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 
 sot-r.1   102588399   2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 
 nta-r.1   107768615   2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 
 nta-r.1   107791921   2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 
 osa-u.5   9266653   2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic-like 
 zma-u.5   103636414   2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 
 zma-u.5   100272499   uncharacterized LOC100272499 
 tae-r.2   123062915   2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 
 tae-r.2   123071780   2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 
 tae-r.2   123080105   2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 
 hvu-r.1   123445098   2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 
 sbi-r.1   8062447   2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 
 bdi-r.1   100829889   2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 
 cre-r.1   CHLRE_16g679669v5   uncharacterized protein 

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Top 50 coexpressed genes to ISPD (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ISPD (ath-u.5 coexpression data)

CoexMap"814779"


athISPD | Entrez gene ID : 814779      
Species ath bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre bra
Paralog 9 2 2 1 1 1 1 1 1 1 2 1 2 3 1 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00900 [list] [network] Terpenoid backbone biosynthesis (61 genes)
GO BP
GO:0019288 [list] [network] isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway  (6 genes)  TAS  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA  
GO:0009536 [list] [network] plastid  (5443 genes)  NAS  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0050518 [list] [network] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity  (1 genes)  IDA  
Protein NP_001325418.1 [sequence] [blastp]
NP_565286.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_001325418.1)
chlo 9  (predict for NP_565286.1)
Subcellular
localization
TargetP
mito 2  (predict for NP_001325418.1)
mito 2  (predict for NP_565286.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
ISPD
ath-r.7
for
ISPD
ath-m.9
for
ISPD
ath-e.2
for
ISPD
ath-m.4.bio
for
ISPD
ath-m.4.hor
for
ISPD
ath-m.4.lig
for
ISPD
ath-m.4.str
for
ISPD
ath-m.4.tis
for
ISPD
bna-r.1
for
106380674
bna-r.1
for
125580067
ghi-r.1
for
121203055
ghi-r.1
for
107901766
cit-r.1
for
102612633
gma-u.5
for
100817632
vvi-u.5
for
100247263
ppo-u.5
for
18098380
mtr-u.5
for
25494363
sly-u.5
for
101251334
sot-r.1
for
102588399
nta-r.1
for
107768615
nta-r.1
for
107791921
osa-u.5
for
9266653
zma-u.5
for
103636414
zma-u.5
for
100272499
tae-r.2
for
123062915
tae-r.2
for
123071780
tae-r.2
for
123080105
hvu-r.1
for
123445098
sbi-r.1
for
8062447
bdi-r.1
for
100829889
cre-r.1
for
CHLRE_16g679669v5


Ortholog ID: 9373
Species ath bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol ISPD LOC106380674 LOC125580067 LOC121203055 LOC107901766 LOC102612633 LOC100817632 LOC100247263 LOC18098380 LOC25494363 LOC101251334 LOC102588399 LOC107768615 LOC107791921 LOC9266653 LOC103636414 LOC100272499 LOC123062915 LOC123071780 LOC123080105 LOC123445098 LOC8062447 LOC100829889 CHLRE_16g679669v5
Function* Nucleotide-diphospho-sugar transferases superfamily protein 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic-like 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic-like 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic-like 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic uncharacterized LOC100272499 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
ath00240 Pyrimidine metabolism 2
ath01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00240 Pyrimidine metabolism 8
bna01232 Nucleotide metabolism 8
bna00230 Purine metabolism 4
bna01240 Biosynthesis of cofactors 4
bna04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
bna00240 Pyrimidine metabolism 3
bna01232 Nucleotide metabolism 3
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03060 Protein export 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03060 Protein export 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00900 Terpenoid backbone biosynthesis 6
cit01240 Biosynthesis of cofactors 4
cit01200 Carbon metabolism 2
cit00230 Purine metabolism 2
cit01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
gma00030 Pentose phosphate pathway 2
gma00230 Purine metabolism 2
gma01200 Carbon metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 3
sly00900 Terpenoid backbone biosynthesis 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta00900 Terpenoid backbone biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 5
osa00970 Aminoacyl-tRNA biosynthesis 3
osa00860 Porphyrin metabolism 3
osa00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00010 Glycolysis / Gluconeogenesis 2
hvu00051 Fructose and mannose metabolism 2
hvu00562 Inositol phosphate metabolism 2
hvu01200 Carbon metabolism 2
hvu00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 4
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00860 Porphyrin metabolism 4
cre01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 814779 106380674 125580067 121203055 107901766 102612633 100817632 100247263 18098380 25494363 101251334 102588399 107768615 107791921 9266653 103636414 100272499 123062915 123071780 123080105 123445098 8062447 100829889 5724440
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