ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	PKS1	phytochrome kinase substrate 1
ath-r.7	PKS1	phytochrome kinase substrate 1
ath-m.9	PKS1	phytochrome kinase substrate 1
ath-e.2	PKS1	phytochrome kinase substrate 1
ath-m.4.bio	PKS1	phytochrome kinase substrate 1
ath-m.4.hor	PKS1	phytochrome kinase substrate 1
ath-m.4.lig	PKS1	phytochrome kinase substrate 1
ath-m.4.str	PKS1	phytochrome kinase substrate 1
ath-m.4.tis	PKS1	phytochrome kinase substrate 1
ath-u.5	PKS2	phytochrome kinase substrate 2
ath-u.5	AT1G18810	phytochrome kinase substrate-like protein
bra-r.6	103835883	protein PHYTOCHROME KINASE SUBSTRATE 3
bra-r.6	103875458	protein PHYTOCHROME KINASE SUBSTRATE 1
bra-r.6	103872121	protein PHYTOCHROME KINASE SUBSTRATE 2
bna-r.1	106407661	protein PHYTOCHROME KINASE SUBSTRATE 1
bna-r.1	125596211	protein PHYTOCHROME KINASE SUBSTRATE 1-like
bna-r.1	111199849	protein PHYTOCHROME KINASE SUBSTRATE 3-like
ghi-r.1	107926637	protein PHYTOCHROME KINASE SUBSTRATE 1
ghi-r.1	107919139	protein PHYTOCHROME KINASE SUBSTRATE 1
ghi-r.1	107908450	protein PHYTOCHROME KINASE SUBSTRATE 1
cit-r.1	102620637	protein PHYTOCHROME KINASE SUBSTRATE 3-like
cit-r.1	102618928	protein PHYTOCHROME KINASE SUBSTRATE 2
gma-u.5	100783459	protein PHYTOCHROME KINASE SUBSTRATE 2
vvi-u.5	104879773	protein PHYTOCHROME KINASE SUBSTRATE 1
vvi-u.5	104882316	protein PHYTOCHROME KINASE SUBSTRATE 3
mtr-u.5	11408887	protein PHYTOCHROME KINASE SUBSTRATE 1
mtr-u.5	11409823	protein PHYTOCHROME KINASE SUBSTRATE 1
sly-u.5	101252996	protein PHYTOCHROME KINASE SUBSTRATE 3
sly-u.5	101264929	protein PHYTOCHROME KINASE SUBSTRATE 1
sly-u.5	101267506	protein PHYTOCHROME KINASE SUBSTRATE 3
sot-r.1	102580385	protein PHYTOCHROME KINASE SUBSTRATE 1
sot-r.1	102602807	protein PHYTOCHROME KINASE SUBSTRATE 3-like
nta-r.1	107760515	protein PHYTOCHROME KINASE SUBSTRATE 2-like
nta-r.1	107763302	protein PHYTOCHROME KINASE SUBSTRATE 1-like
nta-r.1	107813000	protein PHYTOCHROME KINASE SUBSTRATE 1-like

Annotation

functional annotation

KEGG

GO BP

GO:0009585 [list] [network] red, far-red light phototransduction	(20 genes)	IMP
GO:0009638 [list] [network] phototropism	(26 genes)	IGI
GO:0009958 [list] [network] positive gravitropism	(41 genes)	IMP
GO:0010017 [list] [network] red or far-red light signaling pathway	(53 genes)	IMP
GO:0010218 [list] [network] response to far red light	(57 genes)	IEP
GO:0010114 [list] [network] response to red light	(73 genes)	IEP

GO CC

GO:0005886 [list] [network] plasma membrane	(2598 genes)	IDA
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM
GO:0005737 [list] [network] cytoplasm	(14000 genes)	NAS

GO MF

GO:0005515 [list] [network] protein binding

(5363 genes)

IPI

Protein

NP_565292.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, cyto_nucl 5, cyto 1

(predict for NP_565292.1)

Subcellular
localization
TargetP

chlo 8

(predict for NP_565292.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for PKS1	ath-r.7 for PKS1	ath-m.9 for PKS1	ath-e.2 for PKS1	ath-m.4.bio for PKS1	ath-m.4.hor for PKS1	ath-m.4.lig for PKS1	ath-m.4.str for PKS1	ath-m.4.tis for PKS1	ath-u.5 for PKS2	ath-u.5 for AT1G18810	bra-r.6 for 103835883	bra-r.6 for 103875458	bra-r.6 for 103872121	bna-r.1 for 106407661	bna-r.1 for 125596211	bna-r.1 for 111199849	ghi-r.1 for 107926637	ghi-r.1 for 107919139	ghi-r.1 for 107908450	cit-r.1 for 102620637	cit-r.1 for 102618928	gma-u.5 for 100783459	vvi-u.5 for 104879773	vvi-u.5 for 104882316	mtr-u.5 for 11408887	mtr-u.5 for 11409823	sly-u.5 for 101252996	sly-u.5 for 101264929	sly-u.5 for 101267506	sot-r.1 for 102580385	sot-r.1 for 102602807	nta-r.1 for 107760515	nta-r.1 for 107763302	nta-r.1 for 107813000

Ortholog

Ortholog ID: 2971

Species

ath

bra

bna

ghi

cit

gma

vvi

mtr

sly

sot

nta

Symbol

PKS1

PKS2

Function^*

phytochrome kinase substrate 1

phytochrome kinase substrate 2

phytochrome kinase substrate-like protein