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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   UPS1   ureide permease 1 
 ath-r.7   UPS1   ureide permease 1 
 ath-e.2   UPS1   ureide permease 1 
 ath-u.5   UPS2   ureide permease 2 
 ath-u.5   UPS5   ureide permease 5 
 bra-r.6   103839401   ureide permease 1 
 bra-r.6   103853941   ureide permease 1 
 bna-r.1   125574842   ureide permease 1-like 
 bna-r.1   125575030   ureide permease 1-like 
 bna-r.1   106390492   ureide permease 1 
 ghi-r.1   107918698   ureide permease 1 
 ghi-r.1   107918444   ureide permease 1 
 ghi-r.1   107893877   ureide permease 1 
 cit-r.1   102609503   ureide permease 1-like 
 gma-u.5   100802349   ureide permease 1 
 gma-u.5   100801814   probable ureide permease A3 
 gma-u.5   100794172   probable ureide permease A3 
 vvi-u.5   100252466   ureide permease 1 
 ppo-u.5   7471057   ureide permease 1 
 ppo-u.5   18101466   ureide permease 1 
 mtr-u.5   11425933   ureide permease 2 
 mtr-u.5   11436395   ureide permease 1 
 mtr-u.5   11433129   ureide permease 1 
 sly-u.5   101268760   ureide permease 1 
 sly-u.5   101257994   ureide permease 1-like 
 sot-r.1   102597636   ureide permease 1 
 sot-r.1   102595306   ureide permease 1-like 
 nta-r.1   107828897   ureide permease 1-like 
 nta-r.1   107813787   ureide permease 1 
 nta-r.1   107787998   ureide permease 1 
 zma-u.5   100502471   uncharacterized LOC100502471 
 zma-u.5   100272659   uncharacterized LOC100272659 
 tae-r.2   123119909   ureide permease 1 
 hvu-r.1   123452973   ureide permease 1-like 
 sbi-r.1   8064577   ureide permease 1 
 sbi-r.1   8064112   ureide permease 2 
 sbi-r.1   110429543   ureide permease 1-like 
 bdi-r.1   100837106   ureide permease 2 
 bdi-r.1   100839431   ureide permease 1 
 bdi-r.1   100842060   ureide permease 1 

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Top 50 coexpressed genes to UPS1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to UPS1 (ath-u.5 coexpression data)

CoexMap"814888"


athUPS1 | Entrez gene ID : 814888      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta zma tae hvu sbi bdi cre osa
Paralog 5 2 3 3 1 3 1 2 3 2 2 3 2 1 1 3 3 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0015720 [list] [network] allantoin transport  (3 genes)  IDA  
GO:0043100 [list] [network] pyrimidine nucleobase salvage  (4 genes)  TAS  
GO:0015857 [list] [network] uracil transport  (5 genes)  IDA  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
GO:0005274 [list] [network] allantoin:proton symporter activity  (3 genes)  IDA  
GO:0015210 [list] [network] uracil transmembrane transporter activity  (6 genes)  IDA  
Protein NP_001324930.1 [sequence] [blastp]
NP_565303.1 [sequence] [blastp]
Subcellular
localization
wolf
extr 4,  chlo 3,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_001324930.1)
extr 4,  chlo 3,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_565303.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_001324930.1)
scret 9  (predict for NP_565303.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
UPS1
ath-r.7
for
UPS1
ath-e.2
for
UPS1
ath-u.5
for
UPS2
ath-u.5
for
UPS5
bra-r.6
for
103839401
bra-r.6
for
103853941
bna-r.1
for
125574842
bna-r.1
for
125575030
bna-r.1
for
106390492
ghi-r.1
for
107918698
ghi-r.1
for
107918444
ghi-r.1
for
107893877
cit-r.1
for
102609503
gma-u.5
for
100802349
gma-u.5
for
100801814
gma-u.5
for
100794172
vvi-u.5
for
100252466
ppo-u.5
for
7471057
ppo-u.5
for
18101466
mtr-u.5
for
11425933
mtr-u.5
for
11436395
mtr-u.5
for
11433129
sly-u.5
for
101268760
sly-u.5
for
101257994
sot-r.1
for
102597636
sot-r.1
for
102595306
nta-r.1
for
107828897
nta-r.1
for
107813787
nta-r.1
for
107787998
zma-u.5
for
100502471
zma-u.5
for
100272659
tae-r.2
for
123119909
hvu-r.1
for
123452973
sbi-r.1
for
8064577
sbi-r.1
for
8064112
sbi-r.1
for
110429543
bdi-r.1
for
100837106
bdi-r.1
for
100839431
bdi-r.1
for
100842060


Ortholog ID: 2372
Species ath ath bra bra bna bna bna ghi ghi ghi cit gma gma gma vvi ppo ppo mtr mtr mtr sly sly sot sot nta nta nta zma zma tae tae hvu sbi sbi sbi bdi bdi bdi
Symbol UPS2 UPS5 LOC103839401 LOC103853941 LOC125575030 LOC106426974 LOC106378618 LOC107918698 LOC107918444 LOC107893877 LOC102609503 LOC100802349 LOC100801814 LOC100794172 LOC100252466 LOC7471057 LOC18101466 LOC11425933 LOC11436395 LOC11433129 LOC101268760 LOC101257994 LOC102597636 LOC102595306 LOC107828897 LOC107813787 LOC107785001 LOC100502471 LOC100272659 LOC123119909 LOC123102727 LOC123452973 LOC8064577 LOC8064112 LOC110429543 LOC100837106 LOC100839431 LOC100842060
Function* ureide permease 2 ureide permease 5 ureide permease 1 ureide permease 1 ureide permease 1-like ureide permease 1-like ureide permease 1 ureide permease 1 ureide permease 1 ureide permease 1 ureide permease 1-like ureide permease 1 probable ureide permease A3 probable ureide permease A3 ureide permease 1 ureide permease 1 ureide permease 1 ureide permease 2 ureide permease 1 ureide permease 1 ureide permease 1 ureide permease 1-like ureide permease 1 ureide permease 1-like ureide permease 1-like ureide permease 1 ureide permease 1 uncharacterized LOC100502471 uncharacterized LOC100272659 ureide permease 1 ureide permease 1 ureide permease 1-like ureide permease 1 ureide permease 2 ureide permease 1-like ureide permease 2 ureide permease 1 ureide permease 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
bra04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 4
ghi00051 Fructose and mannose metabolism 4
ghi00920 Sulfur metabolism 2
ghi00190 Oxidative phosphorylation 2
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00920 Sulfur metabolism 2
vvi01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
ppo00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04145 Phagosome 2
mtr04517 IgSF CAM signaling 2
mtr04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00261 Monobactam biosynthesis 2
mtr00300 Lysine biosynthesis 2
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00261 Monobactam biosynthesis 2
mtr00300 Lysine biosynthesis 2
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
sot00330 Arginine and proline metabolism 2
sot01200 Carbon metabolism 2
sot00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00999 Biosynthesis of various plant secondary metabolites 2
zma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 3
zma04082 Neuroactive ligand signaling 2
zma04148 Efferocytosis 2
zma00500 Starch and sucrose metabolism 2
zma00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00920 Sulfur metabolism 2
sbi01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00460 Cyanoamino acid metabolism 3
bdi00500 Starch and sucrose metabolism 3
bdi00999 Biosynthesis of various plant secondary metabolites 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03060 Protein export 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 814882 839185 103839401 103853941 125575030 106426974 106378618 107918698 107918444 107893877 102609503 100802349 100801814 100794172 100252466 7471057 18101466 11425933 11436395 11433129 101268760 101257994 102597636 102595306 107828897 107813787 107785001 100502471 100272659 123119909 123102727 123452973 8064577 8064112 110429543 100837106 100839431 100842060
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