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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PFD1   PREFOLDIN 1 
 ath-r.7   PFD1   PREFOLDIN 1 
 ath-m.9   PFD1   PREFOLDIN 1 
 ath-e.2   PFD1   PREFOLDIN 1 
 ath-m.4.bio   PFD1   PREFOLDIN 1 
 ath-m.4.hor   PFD1   PREFOLDIN 1 
 ath-m.4.lig   PFD1   PREFOLDIN 1 
 ath-m.4.str   PFD1   PREFOLDIN 1 
 ath-m.4.tis   PFD1   PREFOLDIN 1 
 bra-r.6   103857170   prefoldin subunit 1 
 bna-r.1   106345894   probable prefoldin subunit 1 
 bna-r.1   106387940   probable prefoldin subunit 1 
 bna-r.1   106423872   probable prefoldin subunit 1 
 ghi-r.1   107904383   prefoldin subunit 1 
 ghi-r.1   121229085   prefoldin subunit 1 
 cit-r.1   102626189   prefoldin subunit 1 
 gma-u.5   100499735   uncharacterized LOC100499735 
 gma-u.5   100306096   putative prefoldin subunit 
 vvi-u.5   100260485   prefoldin subunit 1 
 ppo-u.5   7485523   prefoldin subunit 1 
 mtr-u.5   11445116   prefoldin subunit 1 
 sly-u.5   101266140   prefoldin subunit 1 
 sot-r.1   102583875   prefoldin subunit 1 
 nta-r.1   107789137   prefoldin subunit 1 
 nta-r.1   107767812   prefoldin subunit 1-like 
 osa-u.5   4329310   prefoldin subunit 1 
 zma-u.5   100282212   uncharacterized LOC100282212 
 tae-r.2   123052826   prefoldin subunit 1 
 tae-r.2   123045039   prefoldin subunit 1 
 tae-r.2   123188700   prefoldin subunit 1 
 hvu-r.1   123426176   prefoldin subunit 1 
 sbi-r.1   8081689   prefoldin subunit 1 
 bdi-r.1   100831360   prefoldin subunit 1 
 cre-r.1   CHLRE_09g405400v5   uncharacterized protein 

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Top 50 coexpressed genes to PFD1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PFD1 (ath-u.5 coexpression data)

CoexMap"815304"


athPFD1 | Entrez gene ID : 815304      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0043622 [list] [network] cortical microtubule organization  (50 genes)  ISS  
GO:0071370 [list] [network] cellular response to gibberellin stimulus  (62 genes)  ISS  
GO:0006457 [list] [network] protein folding  (64 genes)  IMP  
GO:0006397 [list] [network] mRNA processing  (185 genes)  ISS  
GO:0009409 [list] [network] response to cold  (436 genes)  IEP  
GO CC
GO:0016272 [list] [network] prefoldin complex  (7 genes)  IEA ISS  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISS  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_178744.3 [sequence] [blastp]
NP_850990.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto_nucl 4,  nucl 3,  nucl_plas 2,  cyto 2,  chlo 2,  cyto_E.R. 1,  plas 1  (predict for NP_178744.3)
cyto_nucl 4,  nucl 3,  nucl_plas 2,  cyto 2,  chlo 2,  cyto_E.R. 1,  plas 1  (predict for NP_850990.1)
Subcellular
localization
TargetP
other 7  (predict for NP_178744.3)
other 7  (predict for NP_850990.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PFD1
ath-r.7
for
PFD1
ath-m.9
for
PFD1
ath-e.2
for
PFD1
ath-m.4.bio
for
PFD1
ath-m.4.hor
for
PFD1
ath-m.4.lig
for
PFD1
ath-m.4.str
for
PFD1
ath-m.4.tis
for
PFD1
bra-r.6
for
103857170
bna-r.1
for
106345894
bna-r.1
for
106387940
bna-r.1
for
106423872
ghi-r.1
for
107904383
ghi-r.1
for
121229085
cit-r.1
for
102626189
gma-u.5
for
100499735
gma-u.5
for
100306096
vvi-u.5
for
100260485
ppo-u.5
for
7485523
mtr-u.5
for
11445116
sly-u.5
for
101266140
sot-r.1
for
102583875
nta-r.1
for
107789137
nta-r.1
for
107767812
osa-u.5
for
4329310
zma-u.5
for
100282212
tae-r.2
for
123052826
tae-r.2
for
123045039
tae-r.2
for
123188700
hvu-r.1
for
123426176
sbi-r.1
for
8081689
bdi-r.1
for
100831360
cre-r.1
for
CHLRE_09g405400v5


Ortholog ID: 9381
Species ath bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol PFD1 LOC103857170 LOC106345894 LOC106387940 LOC106423872 LOC107904383 LOC121229085 LOC102626189 LOC100499735 LOC100306096 LOC100260485 LOC7485523 LOC11445116 LOC101266140 LOC102583875 LOC107789137 LOC107767812 LOC4329310 LOC100282212 LOC123052826 LOC123045039 LOC123188700 LOC123426176 LOC8081689 LOC100831360 CHLRE_09g405400v5
Function* PREFOLDIN 1 prefoldin subunit 1 probable prefoldin subunit 1 probable prefoldin subunit 1 probable prefoldin subunit 1 prefoldin subunit 1 prefoldin subunit 1 prefoldin subunit 1 uncharacterized LOC100499735 putative prefoldin subunit prefoldin subunit 1 prefoldin subunit 1 prefoldin subunit 1 prefoldin subunit 1 prefoldin subunit 1 prefoldin subunit 1 prefoldin subunit 1-like prefoldin subunit 1 uncharacterized LOC100282212 prefoldin subunit 1 prefoldin subunit 1 prefoldin subunit 1 prefoldin subunit 1 prefoldin subunit 1 prefoldin subunit 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03060 Protein export 3
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00510 N-Glycan biosynthesis 5
bna00513 Various types of N-glycan biosynthesis 5
bna04141 Protein processing in endoplasmic reticulum 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00510 N-Glycan biosynthesis 5
bna00513 Various types of N-glycan biosynthesis 5
bna04141 Protein processing in endoplasmic reticulum 5
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00510 N-Glycan biosynthesis 3
bna00513 Various types of N-glycan biosynthesis 3
bna04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 10
ghi00053 Ascorbate and aldarate metabolism 2
ghi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 9
ghi00053 Ascorbate and aldarate metabolism 2
ghi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
cit04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
vvi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
ppo00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 8
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 7
sly03060 Protein export 3
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 4
nta03020 RNA polymerase 3
nta03420 Nucleotide excision repair 3
nta04120 Ubiquitin mediated proteolysis 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 4
nta03420 Nucleotide excision repair 4
nta03050 Proteasome 3
nta04120 Ubiquitin mediated proteolysis 2
nta00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 5
zma03060 Protein export 3
zma04145 Phagosome 3
zma00190 Oxidative phosphorylation 3
zma00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 5
tae03420 Nucleotide excision repair 5
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 3
tae04120 Ubiquitin mediated proteolysis 3
tae00510 N-Glycan biosynthesis 2
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 5
tae03420 Nucleotide excision repair 5
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 7
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 6
cre03018 RNA degradation 2
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 815304 103857170 106345894 106387940 106423872 107904383 121229085 102626189 100499735 100306096 100260485 7485523 11445116 101266140 102583875 107789137 107767812 4329310 100282212 123052826 123045039 123188700 123426176 8081689 100831360 5723206
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