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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CSP3   cold shock domain protein 3 
 ath-r.7   CSP3   cold shock domain protein 3 
 ath-m.9   CSP3   cold shock domain protein 3 
 ath-e.2   CSP3   cold shock domain protein 3 
 ath-m.4.bio   CSP3   cold shock domain protein 3 
 ath-m.4.hor   CSP3   cold shock domain protein 3 
 ath-m.4.lig   CSP3   cold shock domain protein 3 
 ath-m.4.str   CSP3   cold shock domain protein 3 
 ath-m.4.tis   CSP3   cold shock domain protein 3 
 bra-r.6   103845908   cold shock domain-containing protein 3 
 bna-r.1   106445077   cold shock domain-containing protein 3-like 
 bna-r.1   106451670   cold shock domain-containing protein 3 

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Top 50 coexpressed genes to CSP3 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CSP3 (ath-u.5 coexpression data)

CoexMap"816297"


athCSP3 | Entrez gene ID : 816297    
Species ath bra bna cre vvi ppo mtr hvu tae osa gma zma sly ghi cit sbi nta bdi sot
Paralog 9 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009631 [list] [network] cold acclimation  (60 genes)  IMP  
GO:0009826 [list] [network] unidimensional cell growth  (310 genes)  IMP  
GO:0009409 [list] [network] response to cold  (436 genes)  IEP IMP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0140691 [list] [network] RNA folding chaperone  (8 genes)  IDA  
GO:0008270 [list] [network] zinc ion binding  (391 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_565427.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  mito 1,  plas 1,  cyto_pero 1,  mito_plas 1,  cyto_E.R. 1  (predict for NP_565427.1)
Subcellular
localization
TargetP
other 8  (predict for NP_565427.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
CSP3
ath-r.7
for
CSP3
ath-m.9
for
CSP3
ath-e.2
for
CSP3
ath-m.4.bio
for
CSP3
ath-m.4.hor
for
CSP3
ath-m.4.lig
for
CSP3
ath-m.4.str
for
CSP3
ath-m.4.tis
for
CSP3
bra-r.6
for
103845908
bna-r.1
for
106445077
bna-r.1
for
106451670


Ortholog ID: 22507
Species ath bra bna bna
Symbol CSP3 LOC103845908 LOC106445077 LOC106451670
Function* cold shock domain protein 3 cold shock domain-containing protein 3 cold shock domain-containing protein 3-like cold shock domain-containing protein 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 2
bna04146 Peroxisome 2
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 3
bna03083 Polycomb repressive complex 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816297 103845908 106445077 106451670
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