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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT2G20060   Ribosomal protein L4/L1 family 
 ath-r.7   AT2G20060   Ribosomal protein L4/L1 family 
 ath-m.9   AT2G20060   Ribosomal protein L4/L1 family 
 ath-e.2   AT2G20060   Ribosomal protein L4/L1 family 
 ath-m.4.bio   AT2G20060   Ribosomal protein L4/L1 family 
 ath-m.4.hor   AT2G20060   Ribosomal protein L4/L1 family 
 ath-m.4.lig   AT2G20060   Ribosomal protein L4/L1 family 
 ath-m.4.str   AT2G20060   Ribosomal protein L4/L1 family 
 ath-m.4.tis   AT2G20060   Ribosomal protein L4/L1 family 
 bra-r.6   103842616   50S ribosomal protein L4 
 bra-r.6   108870453   50S ribosomal protein L4 
 bna-r.1   125576631   50S ribosomal protein L4-like 
 bna-r.1   106436065   50S ribosomal protein L4 
 bna-r.1   106357958   50S ribosomal protein L4 
 ghi-r.1   107958294   50S ribosomal protein L4 
 ghi-r.1   107905905   50S ribosomal protein L4 
 cit-r.1   102614390   uncharacterized LOC102614390 
 gma-u.5   100804238   50S ribosomal protein L4-like 
 gma-u.5   100784680   50S ribosomal protein L4 
 vvi-u.5   100265870   uncharacterized LOC100265870 
 ppo-u.5   18097326   uncharacterized LOC18097326 
 mtr-u.5   11437070   50S ribosomal protein L4 
 sly-u.5   101261898   uncharacterized LOC101261898 
 sot-r.1   102580579   50S ribosomal protein L4 
 nta-r.1   107762007   uncharacterized LOC107762007 
 nta-r.1   107794981   uncharacterized LOC107794981 
 nta-r.1   107807625   uncharacterized LOC107807625 
 osa-u.5   4350797   uncharacterized LOC4350797 
 zma-u.5   100280943   50S ribosomal protein L4-like 
 tae-r.2   123143437   50S ribosomal protein L4 
 tae-r.2   123135927   50S ribosomal protein L4 
 tae-r.2   123103973   50S ribosomal protein L4 
 hvu-r.1   123402234   50S ribosomal protein L4-like 
 hvu-r.1   123398718   50S ribosomal protein L4-like 
 sbi-r.1   8061138   50S ribosomal protein L4 
 sbi-r.1   8072011   50S ribosomal protein L4 
 bdi-r.1   100828027   50S ribosomal protein L4 
 cre-r.1   CHLRE_12g520400v5   uncharacterized protein 

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Top 50 coexpressed genes to AT2G20060 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT2G20060 (ath-u.5 coexpression data)

CoexMap"816525"


athAT2G20060 | Entrez gene ID : 816525      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 2 1 1 1 1 1 3 1 1 3 2 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03010 [list] [network] Ribosome (394 genes)
GO BP
GO:0006412 [list] [network] translation  (926 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (75 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_565463.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  chlo 4,  cyto_mito 3,  nucl 1,  plas 1,  nucl_plas 1  (predict for NP_565463.1)
Subcellular
localization
TargetP
chlo 7,  mito 6  (predict for NP_565463.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT2G20060
ath-r.7
for
AT2G20060
ath-m.9
for
AT2G20060
ath-e.2
for
AT2G20060
ath-m.4.bio
for
AT2G20060
ath-m.4.hor
for
AT2G20060
ath-m.4.lig
for
AT2G20060
ath-m.4.str
for
AT2G20060
ath-m.4.tis
for
AT2G20060
bra-r.6
for
103842616
bra-r.6
for
108870453
bna-r.1
for
125576631
bna-r.1
for
106436065
bna-r.1
for
106357958
ghi-r.1
for
107958294
ghi-r.1
for
107905905
cit-r.1
for
102614390
gma-u.5
for
100804238
gma-u.5
for
100784680
vvi-u.5
for
100265870
ppo-u.5
for
18097326
mtr-u.5
for
11437070
sly-u.5
for
101261898
sot-r.1
for
102580579
nta-r.1
for
107762007
nta-r.1
for
107794981
nta-r.1
for
107807625
osa-u.5
for
4350797
zma-u.5
for
100280943
tae-r.2
for
123143437
tae-r.2
for
123135927
tae-r.2
for
123103973
hvu-r.1
for
123402234
hvu-r.1
for
123398718
sbi-r.1
for
8061138
sbi-r.1
for
8072011
bdi-r.1
for
100828027
cre-r.1
for
CHLRE_12g520400v5


Ortholog ID: 6806
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta nta osa zma tae tae tae hvu hvu sbi sbi bdi cre
Symbol AT2G20060 LOC103842616 LOC108870453 LOC125576631 LOC106436065 LOC106357958 LOC107958294 LOC107905905 LOC102614390 LOC100804238 LOC100784680 LOC100265870 LOC18097326 LOC11437070 LOC101261898 LOC102580579 LOC107762007 LOC107794981 LOC107807625 LOC4350797 LOC100280943 LOC123143437 LOC123131924 LOC123124905 LOC123402234 LOC123398718 LOC8061138 LOC8072011 LOC100828027 CHLRE_12g520400v5
Function* Ribosomal protein L4/L1 family 50S ribosomal protein L4 50S ribosomal protein L4 50S ribosomal protein L4-like 50S ribosomal protein L4 50S ribosomal protein L4 50S ribosomal protein L4 50S ribosomal protein L4 uncharacterized LOC102614390 50S ribosomal protein L4-like 50S ribosomal protein L4 uncharacterized LOC100265870 uncharacterized LOC18097326 50S ribosomal protein L4 uncharacterized LOC101261898 50S ribosomal protein L4 uncharacterized LOC107762007 uncharacterized LOC107794981 uncharacterized LOC107807625 uncharacterized LOC4350797 50S ribosomal protein L4-like 50S ribosomal protein L4 50S ribosomal protein L4 50S ribosomal protein L4 50S ribosomal protein L4-like 50S ribosomal protein L4-like 50S ribosomal protein L4 50S ribosomal protein L4 50S ribosomal protein L4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 11
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 11
ghi03018 RNA degradation 4
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 5
cit01230 Biosynthesis of amino acids 4
cit00020 Citrate cycle (TCA cycle) 3
cit01210 2-Oxocarboxylic acid metabolism 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 15
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 10
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 10
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
nta03008 Ribosome biogenesis in eukaryotes 3
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 4
zma03018 RNA degradation 4
zma03010 Ribosome 4
zma00970 Aminoacyl-tRNA biosynthesis 2
zma00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae00230 Purine metabolism 2
tae01232 Nucleotide metabolism 2
tae01240 Biosynthesis of cofactors 2
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
hvu03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 10
hvu01230 Biosynthesis of amino acids 2
hvu00240 Pyrimidine metabolism 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
sbi03082 ATP-dependent chromatin remodeling 2
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
sbi03082 ATP-dependent chromatin remodeling 2
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816525 103842616 108870453 125576631 106436065 106357958 107958294 107905905 102614390 100804238 100784680 100265870 18097326 11437070 101261898 102580579 107762007 107794981 107807625 4350797 100280943 123143437 123131924 123124905 123402234 123398718 8061138 8072011 100828027 66055587
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