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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT2G40770   RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein 
 ath-r.7   AT2G40770   RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein 
 ath-m.9   AT2G40770   RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein 
 ath-e.2   AT2G40770   RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein 
 ath-m.4.bio   AT2G40770   RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein 
 ath-m.4.hor   AT2G40770   RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein 
 ath-m.4.lig   AT2G40770   RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein 
 ath-m.4.str   AT2G40770   RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein 
 ath-m.4.tis   AT2G40770   RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein 
 gma-u.5   100776659   E3 ubiquitin-protein ligase SHPRH 
 vvi-u.5   100248506   uncharacterized LOC100248506 
 ppo-u.5   18108340   uncharacterized LOC18108340 
 mtr-u.5   11410582   E3 ubiquitin-protein ligase SHPRH 
 sly-u.5   101254366   uncharacterized LOC101254366 
 osa-u.5   4344297   uncharacterized LOC4344297 
 zma-u.5   103633565   E3 ubiquitin-protein ligase SHPRH 

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Top 50 coexpressed genes to AT2G40770 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT2G40770 (ath-u.5 coexpression data)

CoexMap"818674"


athAT2G40770 | Entrez gene ID : 818674      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 9 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0140658 [list] [network] ATP-dependent chromatin remodeler activity  (21 genes)  IEA  
Protein NP_001318395.1 [sequence] [blastp]
NP_001325178.1 [sequence] [blastp]
NP_181609.4 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  mito 2,  chlo 2,  cyto_mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_001318395.1)
nucl 3,  mito 2,  chlo 2,  cyto_mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_001325178.1)
nucl 3,  mito 2,  chlo 2,  cyto_mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_181609.4)
Subcellular
localization
TargetP
mito 6  (predict for NP_001318395.1)
mito 6  (predict for NP_001325178.1)
mito 6  (predict for NP_181609.4)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT2G40770

.
ath-r.7
for
AT2G40770

.
ath-m.9
for
AT2G40770

.
ath-e.2
for
AT2G40770

.
ath-m.4.bio
for
AT2G40770

.
ath-m.4.hor
for
AT2G40770

.
ath-m.4.lig
for
AT2G40770

.
ath-m.4.str
for
AT2G40770

.
ath-m.4.tis
for
AT2G40770

.
gma-u.5
for
100776659

.
vvi-u.5
for
100248506

.
ppo-u.5
for
18108340

.
mtr-u.5
for
11410582

.
sly-u.5
for
101254366

.
osa-u.5
for
4344297

.
zma-u.5
for
103633565

.


Ortholog ID: 8421
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sot cit bdi nta nta
Symbol AT2G40770 LOC100776659 LOC101254366 LOC4344297 LOC103633565 LOC103865835 LOC100248506 LOC18108340 LOC11410582 LOC123187471 LOC123051548 LOC123424704 LOC123411449 LOC107916261 LOC107896570 LOC106347815 LOC106391618 CHLRE_06g304000v5 CHLRE_13g603400v5 LOC8074455 LOC102582668 LOC102630976 LOC100827745 LOC107802983 LOC107776915
Function* RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein E3 ubiquitin-protein ligase SHPRH uncharacterized LOC101254366 uncharacterized LOC4344297 E3 ubiquitin-protein ligase SHPRH E3 ubiquitin-protein ligase SHPRH uncharacterized LOC100248506 uncharacterized LOC18108340 E3 ubiquitin-protein ligase SHPRH E3 ubiquitin-protein ligase SHPRH E3 ubiquitin-protein ligase SHPRH E3 ubiquitin-protein ligase SHPRH-like E3 ubiquitin-protein ligase SHPRH-like E3 ubiquitin-protein ligase SHPRH E3 ubiquitin-protein ligase SHPRH E3 ubiquitin-protein ligase SHPRH-like E3 ubiquitin-protein ligase SHPRH uncharacterized protein uncharacterized protein E3 ubiquitin-protein ligase SHPRH E3 ubiquitin-protein ligase SHPRH uncharacterized LOC102630976 E3 ubiquitin-protein ligase SHPRH uncharacterized LOC107802983 uncharacterized LOC107776915
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 3
ath03250 Viral life cycle - HIV-1 3
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00564 Glycerophospholipid metabolism 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 5
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
tae03082 ATP-dependent chromatin remodeling 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
ghi00232 Caffeine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
ghi00232 Caffeine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00310 Lysine degradation 4
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00310 Lysine degradation 4
bna02010 ABC transporters 3
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 2
nta03082 ATP-dependent chromatin remodeling 2
nta04136 Autophagy - other 2
nta04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00051 Fructose and mannose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818674 100776659 101254366 4344297 103633565 103865835 100248506 18108340 11410582 123187471 123051548 123424704 123411449 107916261 107896570 106347815 106391618 5716918 5724666 8074455 102582668 102630976 100827745 107802983 107776915
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