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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PP5.2   protein phosphatase 5.2 
 ath-r.7   PP5.2   protein phosphatase 5.2 
 ath-m.9   PP5.2   protein phosphatase 5.2 
 ath-e.2   PP5.2   protein phosphatase 5.2 
 ath-m.4.bio   PP5.2   protein phosphatase 5.2 
 ath-m.4.hor   PP5.2   protein phosphatase 5.2 
 ath-m.4.lig   PP5.2   protein phosphatase 5.2 
 ath-m.4.str   PP5.2   protein phosphatase 5.2 
 ath-m.4.tis   PP5.2   protein phosphatase 5.2 
 gma-u.5   100820099   serine/threonine-protein phosphatase 5 
 gma-u.5   100806083   serine/threonine-protein phosphatase 5 
 vvi-u.5   100259074   serine/threonine-protein phosphatase 5 
 ppo-u.5   18105309   serine/threonine-protein phosphatase 5 
 mtr-u.5   25490671   serine/threonine-protein phosphatase 5 
 mtr-u.5   11432942   serine/threonine-protein phosphatase 5 
 sly-u.5   PP5   serine/threonine-protein phosphatase 5 
 osa-u.5   4338070   serine/threonine-protein phosphatase 5 
 zma-u.5   100283669   serine/threonine-protein phosphatase 5 

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Top 50 coexpressed genes to PP5.2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PP5.2 (ath-u.5 coexpression data)

CoexMap"818881"


athPP5.2 | Entrez gene ID : 818881      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 9 2 1 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1902325 [list] [network] negative regulation of chlorophyll biosynthetic process  (1 genes)  IMP  
GO:0010019 [list] [network] chloroplast-nucleus signaling pathway  (9 genes)  IGI  
GO:0006913 [list] [network] nucleocytoplasmic transport  (53 genes)  ISS  
GO:0010017 [list] [network] red or far-red light signaling pathway  (53 genes)  IMP  
GO CC
GO:0005635 [list] [network] nuclear envelope  (107 genes)  IDA  
GO:0005789 [list] [network] endoplasmic reticulum membrane  (120 genes)  IDA  
GO:0009506 [list] [network] plasmodesma  (874 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM ISS  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0004722 [list] [network] protein serine/threonine phosphatase activity  (46 genes)  ISS  
GO:0004721 [list] [network] phosphoprotein phosphatase activity  (71 genes)  IDA  
GO:0046906 [list] [network] tetrapyrrole binding  (131 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001031534.1 [sequence] [blastp]
NP_001323831.1 [sequence] [blastp]
NP_001323832.1 [sequence] [blastp]
NP_001323833.1 [sequence] [blastp]
NP_565985.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 5,  E.R. 2,  nucl 1,  cyto 1,  vacu 1,  golg 1,  cyto_nucl 1  (predict for NP_001031534.1)
plas 5,  E.R. 2,  nucl 1,  cyto 1,  vacu 1,  golg 1,  cyto_nucl 1  (predict for NP_001323831.1)
nucl 4,  cysk 4,  cysk_nucl 4  (predict for NP_001323832.1)
nucl 4,  cysk 4,  cysk_nucl 4  (predict for NP_001323833.1)
nucl 4,  cysk 4,  cysk_nucl 4  (predict for NP_565985.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001031534.1)
other 9  (predict for NP_001323831.1)
other 9  (predict for NP_001323832.1)
other 9  (predict for NP_001323833.1)
other 9  (predict for NP_565985.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PP5.2
ath-r.7
for
PP5.2
ath-m.9
for
PP5.2
ath-e.2
for
PP5.2
ath-m.4.bio
for
PP5.2
ath-m.4.hor
for
PP5.2
ath-m.4.lig
for
PP5.2
ath-m.4.str
for
PP5.2
ath-m.4.tis
for
PP5.2
gma-u.5
for
100820099
gma-u.5
for
100806083
vvi-u.5
for
100259074
ppo-u.5
for
18105309
mtr-u.5
for
25490671
mtr-u.5
for
11432942
sly-u.5
for
PP5
osa-u.5
for
4338070
zma-u.5
for
100283669


Ortholog ID: 7549
Species ath bra bra bna bna ghi ghi cit gma gma vvi ppo mtr mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol PP5.2 LOC103866664 LOC103865967 LOC106361776 LOC106377403 LOC107914252 LOC107953450 LOC102627622 LOC100820099 LOC100806083 LOC100259074 LOC18105309 LOC11432942 LOC25490671 PP5 LOC102595218 LOC107787403 LOC107825344 LOC4338070 LOC100283669 LOC123077690 LOC123060605 LOC123443098 LOC8065924 LOC100825585 CHLRE_07g326800v5
Function* protein phosphatase 5.2 serine/threonine-protein phosphatase 5 serine/threonine-protein phosphatase 5 serine/threonine-protein phosphatase 5-like serine/threonine-protein phosphatase 5 serine/threonine-protein phosphatase 5 serine/threonine-protein phosphatase 5 serine/threonine-protein phosphatase 5 serine/threonine-protein phosphatase 5 serine/threonine-protein phosphatase 5 serine/threonine-protein phosphatase 5 serine/threonine-protein phosphatase 5 serine/threonine-protein phosphatase 5 serine/threonine-protein phosphatase 5 serine/threonine-protein phosphatase 5 serine/threonine-protein phosphatase 5 serine/threonine-protein phosphatase 5-like serine/threonine-protein phosphatase 5 serine/threonine-protein phosphatase 5 serine/threonine-protein phosphatase 5 serine/threonine-protein phosphatase 5 serine/threonine-protein phosphatase 5 serine/threonine-protein phosphatase 5 serine/threonine-protein phosphatase 5 serine/threonine-protein phosphatase 5 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 4
ath03015 mRNA surveillance pathway 2
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 5
bra00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 7
bra03420 Nucleotide excision repair 2
bra04120 Ubiquitin mediated proteolysis 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04122 Sulfur relay system 2
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 5
ppo03015 mRNA surveillance pathway 3
ppo00300 Lysine biosynthesis 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 4
mtr00970 Aminoacyl-tRNA biosynthesis 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 4
sly03008 Ribosome biogenesis in eukaryotes 2
sly00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03013 Nucleocytoplasmic transport 4
sot03015 mRNA surveillance pathway 4
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03015 mRNA surveillance pathway 5
nta03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03015 mRNA surveillance pathway 5
nta03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 2
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 7
zma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 7
tae00250 Alanine, aspartate and glutamate metabolism 3
tae01230 Biosynthesis of amino acids 3
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03008 Ribosome biogenesis in eukaryotes 2
tae03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 8
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818881 103866664 103865967 106361776 106377403 107914252 107953450 102627622 100820099 100806083 100259074 18105309 11432942 25490671 543849 102595218 107787403 107825344 4338070 100283669 123077690 123060605 123443098 8065924 100825585 5716237
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