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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   CRR4   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.bio   CRR4   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.hor   CRR4   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.lig   CRR4   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.str   CRR4   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.tis   CRR4   Pentatricopeptide repeat (PPR) superfamily protein 
 bra-r.6   103866882   pentatricopeptide repeat-containing protein At2g45350, chloroplastic 
 bna-r.1   106396174   pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like 
 bna-r.1   106450903   pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like 
 ghi-r.1   107911582   pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like 
 ghi-r.1   107941751   pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like 
 cit-r.1   102623602   pentatricopeptide repeat-containing protein At2g45350, chloroplastic 
 gma-u.5   100788616   pentatricopeptide repeat-containing protein At2g45350, chloroplastic 
 vvi-u.5   100241999   pentatricopeptide repeat-containing protein At2g45350, chloroplastic 
 ppo-u.5   7488898   pentatricopeptide repeat-containing protein At2g45350, chloroplastic 
 sly-u.5   101251033   pentatricopeptide repeat-containing protein At2g45350, chloroplastic 
 sot-r.1   102599266   pentatricopeptide repeat-containing protein At2g45350, chloroplastic 
 nta-r.1   107774565   pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like 
 nta-r.1   107821580   pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like 

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Top 50 coexpressed genes to CRR4 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CRR4 (ath-m.9 coexpression data)

CoexMap"819143"


athCRR4 | Entrez gene ID : 819143      
Species ath bra bna ghi cit gma vvi ppo sly sot nta mtr bdi zma cre hvu sbi osa tae
Paralog 6 1 2 2 1 1 1 1 1 1 2 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1900865 [list] [network] chloroplast RNA modification  (18 genes)  IMP  
GO:0016556 [list] [network] mRNA modification  (34 genes)  IMP  
GO CC
GO:0005773 [list] [network] vacuole  (984 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA IMP ISM ISS  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_182060.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 2,  cyto 1,  extr 1,  vacu 1,  cyto_pero 1,  mito_plas 1,  cyto_E.R. 1  (predict for NP_182060.2)
Subcellular
localization
TargetP
other 6  (predict for NP_182060.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
CRR4
ath-m.4.bio
for
CRR4
ath-m.4.hor
for
CRR4
ath-m.4.lig
for
CRR4
ath-m.4.str
for
CRR4
ath-m.4.tis
for
CRR4
bra-r.6
for
103866882
bna-r.1
for
106396174
bna-r.1
for
106450903
ghi-r.1
for
107911582
ghi-r.1
for
107941751
cit-r.1
for
102623602
gma-u.5
for
100788616
vvi-u.5
for
100241999
ppo-u.5
for
7488898
sly-u.5
for
101251033
sot-r.1
for
102599266
nta-r.1
for
107774565
nta-r.1
for
107821580


Ortholog ID: 13426
Species bra bna bna ghi ghi cit gma vvi ppo sly sot nta nta
Symbol LOC103866882 LOC106396174 LOC106450903 LOC107911582 LOC107941751 LOC102623602 LOC100788616 LOC100241999 LOC7488898 LOC101251033 LOC102599266 LOC107774565 LOC107821580
Function* pentatricopeptide repeat-containing protein At2g45350, chloroplastic pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like pentatricopeptide repeat-containing protein At2g45350, chloroplastic pentatricopeptide repeat-containing protein At2g45350, chloroplastic pentatricopeptide repeat-containing protein At2g45350, chloroplastic pentatricopeptide repeat-containing protein At2g45350, chloroplastic pentatricopeptide repeat-containing protein At2g45350, chloroplastic pentatricopeptide repeat-containing protein At2g45350, chloroplastic pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 3
bra00670 One carbon pool by folate 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103866882 106396174 106450903 107911582 107941751 102623602 100788616 100241999 7488898 101251033 102599266 107774565 107821580
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