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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CCA1   circadian clock associated 1 
 ath-r.7   CCA1   circadian clock associated 1 
 ath-m.9   CCA1   circadian clock associated 1 
 ath-e.2   CCA1   circadian clock associated 1 
 ath-m.4.bio   CCA1   circadian clock associated 1 
 ath-m.4.hor   CCA1   circadian clock associated 1 
 ath-m.4.lig   CCA1   circadian clock associated 1 
 ath-m.4.str   CCA1   circadian clock associated 1 
 ath-m.4.tis   CCA1   circadian clock associated 1 

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Top 50 coexpressed genes to CCA1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CCA1 (ath-u.5 coexpression data)

CoexMap"819296"


athCCA1 | Entrez gene ID : 819296      
Species ath bdi bra gma ppo sbi ghi sot nta cre tae zma mtr hvu vvi cit bna sly osa
Paralog 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04712 [list] [network] Circadian rhythm - plant (43 genes)
GO BP
GO:0042754 [list] [network] negative regulation of circadian rhythm  (3 genes)  IMP  
GO:0010378 [list] [network] temperature compensation of the circadian clock  (4 genes)  IMP  
GO:0048574 [list] [network] long-day photoperiodism, flowering  (20 genes)  IGI  
GO:0043254 [list] [network] regulation of protein-containing complex assembly  (23 genes)  IMP  
GO:0007623 [list] [network] circadian rhythm  (124 genes)  IEP IGI IMP TAS  
GO:0045892 [list] [network] negative regulation of DNA-templated transcription  (200 genes)  IMP  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (262 genes)  IMP  
GO:0009408 [list] [network] response to heat  (271 genes)  IEP  
GO:0009409 [list] [network] response to cold  (436 genes)  IGI  
GO:0010468 [list] [network] regulation of gene expression  (2062 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0019904 [list] [network] protein domain specific binding  (33 genes)  ISS  
GO:0000987 [list] [network] cis-regulatory region sequence-specific DNA binding  (55 genes)  IDA  
GO:0043565 [list] [network] sequence-specific DNA binding  (875 genes)  IDA  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001318437.1 [sequence] [blastp]
NP_850460.1 [sequence] [blastp]
NP_850461.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001318437.1)
nucl 10  (predict for NP_850460.1)
nucl 9  (predict for NP_850461.1)
Subcellular
localization
TargetP
other 6,  chlo 4  (predict for NP_001318437.1)
other 9  (predict for NP_850460.1)
other 6,  chlo 4  (predict for NP_850461.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
CCA1
ath-r.7
for
CCA1
ath-m.9
for
CCA1
ath-e.2
for
CCA1
ath-m.4.bio
for
CCA1
ath-m.4.hor
for
CCA1
ath-m.4.lig
for
CCA1
ath-m.4.str
for
CCA1
ath-m.4.tis
for
CCA1


Ortholog ID: 22586
Species ath bra bna bna
Symbol CCA1 CCA1 LOC106450471 LOC106416040
Function* circadian clock associated 1 cataract, congenital, cerulean type, 1 protein CCA1 protein CCA1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 3
bna00860 Porphyrin metabolism 2
bna00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 3
bna00860 Porphyrin metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819296 103866427 106450471 106416040
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