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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G05060   NOP56-like pre RNA processing ribonucleoprotein 
 ath-r.7   AT3G05060   NOP56-like pre RNA processing ribonucleoprotein 
 ath-m.9   AT3G05060   NOP56-like pre RNA processing ribonucleoprotein 
 ath-e.2   AT3G05060   NOP56-like pre RNA processing ribonucleoprotein 
 ath-m.4.bio   AT3G05060   NOP56-like pre RNA processing ribonucleoprotein 
 ath-m.4.hor   AT3G05060   NOP56-like pre RNA processing ribonucleoprotein 
 ath-m.4.lig   AT3G05060   NOP56-like pre RNA processing ribonucleoprotein 
 ath-m.4.str   AT3G05060   NOP56-like pre RNA processing ribonucleoprotein 
 ath-m.4.tis   AT3G05060   NOP56-like pre RNA processing ribonucleoprotein 
 ath-u.5   AT5G27120   NOP56-like pre RNA processing ribonucleoprotein 
 bra-r.6   103874558   probable nucleolar protein 5-1 
 bra-r.6   103854646   probable nucleolar protein 5-1 
 bra-r.6   103837322   probable nucleolar protein 5-1 
 bna-r.1   125606782   probable nucleolar protein 5-1 
 bna-r.1   111198687   probable nucleolar protein 5-1 
 bna-r.1   125577699   probable nucleolar protein 5-1 
 ghi-r.1   107933838   probable nucleolar protein 5-2 
 ghi-r.1   107894650   probable nucleolar protein 5-2 
 ghi-r.1   107893247   probable nucleolar protein 5-2 
 cit-r.1   102607893   probable nucleolar protein 5-2 
 cit-r.1   102617154   probable nucleolar protein 5-2 
 gma-u.5   100775301   probable nucleolar protein 5-2 
 gma-u.5   100784721   probable nucleolar protein 5-2 
 vvi-u.5   100248675   probable nucleolar protein 5-2 
 ppo-u.5   18098893   probable nucleolar protein 5-1 
 ppo-u.5   7473909   probable nucleolar protein 5-2 
 mtr-u.5   11437645   probable nucleolar protein 5-1 
 mtr-u.5   11436777   probable nucleolar protein 5-2 
 sly-u.5   101263757   MAR-binding protein 
 sly-u.5   101255995   probable nucleolar protein 5-2 
 sot-r.1   102591435   probable nucleolar protein 5-2 
 sot-r.1   102585448   probable nucleolar protein 5-2 
 nta-r.1   107803219   probable nucleolar protein 5-2 
 nta-r.1   107813446   putative nucleolar protein 5-2 
 osa-u.5   4332840   probable nucleolar protein 5-2 
 osa-u.5   4332841   probable nucleolar protein 5-2 
 zma-u.5   103639139   probable nucleolar protein 5-2 
 zma-u.5   103631271   probable nucleolar protein 5-2 
 zma-u.5   103649398   probable nucleolar protein 5-2 
 tae-r.2   123142823   probable nucleolar protein 5-2 
 tae-r.2   123051654   probable nucleolar protein 5-2 
 tae-r.2   123187584   probable nucleolar protein 5-2 
 hvu-r.1   123424804   probable nucleolar protein 5-2 
 hvu-r.1   123448571   probable nucleolar protein 5-2 
 sbi-r.1   110431124   probable nucleolar protein 5-2 
 sbi-r.1   8079815   probable nucleolar protein 5-2 
 bdi-r.1   100841812   probable nucleolar protein 5-2 
 bdi-r.1   100838508   probable nucleolar protein 5-2 
 cre-r.1   CHLRE_10g441400v5   uncharacterized protein 

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Top 50 coexpressed genes to AT3G05060 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G05060 (ath-u.5 coexpression data)

CoexMap"819668"


athAT3G05060 | Entrez gene ID : 819668      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 3 3 2 2 1 2 2 2 2 2 2 3 3 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
GO BP
GO CC
GO:0005730 [list] [network] nucleolus  (394 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_187157.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 3,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_187157.1)
Subcellular
localization
TargetP
other 4,  scret 3  (predict for NP_187157.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G05060
ath-r.7
for
AT3G05060
ath-m.9
for
AT3G05060
ath-e.2
for
AT3G05060
ath-m.4.bio
for
AT3G05060
ath-m.4.hor
for
AT3G05060
ath-m.4.lig
for
AT3G05060
ath-m.4.str
for
AT3G05060
ath-m.4.tis
for
AT3G05060
ath-u.5
for
AT5G27120
bra-r.6
for
103874558
bra-r.6
for
103854646
bra-r.6
for
103837322
bna-r.1
for
125606782
bna-r.1
for
111198687
bna-r.1
for
125577699
ghi-r.1
for
107933838
ghi-r.1
for
107894650
ghi-r.1
for
107893247
cit-r.1
for
102607893
cit-r.1
for
102617154
gma-u.5
for
100775301
gma-u.5
for
100784721
vvi-u.5
for
100248675
ppo-u.5
for
18098893
ppo-u.5
for
7473909
mtr-u.5
for
11437645
mtr-u.5
for
11436777
sly-u.5
for
101263757
sly-u.5
for
101255995
sot-r.1
for
102591435
sot-r.1
for
102585448
nta-r.1
for
107803219
nta-r.1
for
107813446
osa-u.5
for
4332840
osa-u.5
for
4332841
zma-u.5
for
103639139
zma-u.5
for
103631271
zma-u.5
for
103649398
tae-r.2
for
123142823
tae-r.2
for
123051654
tae-r.2
for
123187584
hvu-r.1
for
123424804
hvu-r.1
for
123448571
sbi-r.1
for
110431124
sbi-r.1
for
8079815
bdi-r.1
for
100841812
bdi-r.1
for
100838508
cre-r.1
for
CHLRE_10g441400v5


Ortholog ID: 3568
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol AT3G05060 AT5G27120 LOC103874558 LOC103854646 LOC103837322 LOC125606782 LOC106348654 LOC106364857 LOC107933838 LOC107894650 LOC107899143 LOC102607893 LOC102617154 LOC100775301 LOC100784721 LOC100248675 LOC18098893 LOC7473909 LOC11437645 LOC11436777 LOC101263757 LOC101255995 LOC102591435 LOC102585448 LOC107803219 LOC107813446 LOC4332840 LOC4332841 LOC103639139 LOC103631271 LOC103649398 LOC123142823 LOC123051654 LOC123187584 LOC123424804 LOC123448571 LOC110431124 LOC8079815 LOC100841812 LOC100838508 CHLRE_10g441400v5
Function* NOP56-like pre RNA processing ribonucleoprotein NOP56-like pre RNA processing ribonucleoprotein probable nucleolar protein 5-1 probable nucleolar protein 5-1 probable nucleolar protein 5-1 probable nucleolar protein 5-1 probable nucleolar protein 5-1 probable nucleolar protein 5-1 probable nucleolar protein 5-2 probable nucleolar protein 5-2 probable nucleolar protein 5-2 probable nucleolar protein 5-2 probable nucleolar protein 5-2 probable nucleolar protein 5-2 probable nucleolar protein 5-2 probable nucleolar protein 5-2 probable nucleolar protein 5-1 probable nucleolar protein 5-2 probable nucleolar protein 5-1 probable nucleolar protein 5-2 MAR-binding protein probable nucleolar protein 5-2 probable nucleolar protein 5-2 probable nucleolar protein 5-2 probable nucleolar protein 5-2 putative nucleolar protein 5-2 probable nucleolar protein 5-2 probable nucleolar protein 5-2 probable nucleolar protein 5-2 probable nucleolar protein 5-2 probable nucleolar protein 5-2 probable nucleolar protein 5-2 probable nucleolar protein 5-2 probable nucleolar protein 5-2 probable nucleolar protein 5-2 probable nucleolar protein 5-2 probable nucleolar protein 5-2 probable nucleolar protein 5-2 probable nucleolar protein 5-2 probable nucleolar protein 5-2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 9
bna00230 Purine metabolism 2
bna01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 8
nta03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 8
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 7
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 8
tae03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 9
tae04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 7
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 6
bdi03020 RNA polymerase 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 8
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819668 832770 103874558 103854646 103837322 125606782 106348654 106364857 107933838 107894650 107899143 102607893 102617154 100775301 100784721 100248675 18098893 7473909 11437645 11436777 101263757 101255995 102591435 102585448 107803219 107813446 4332840 4332841 103639139 103631271 103649398 123142823 123051654 123187584 123424804 123448571 110431124 8079815 100841812 100838508 5715998
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