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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G05500   Rubber elongation factor protein (REF) 
 ath-r.7   AT3G05500   Rubber elongation factor protein (REF) 
 ath-m.9   AT3G05500   Rubber elongation factor protein (REF) 
 ath-e.2   AT3G05500   Rubber elongation factor protein (REF) 
 ath-m.4.bio   AT3G05500   Rubber elongation factor protein (REF) 
 ath-m.4.hor   AT3G05500   Rubber elongation factor protein (REF) 
 ath-m.4.lig   AT3G05500   Rubber elongation factor protein (REF) 
 ath-m.4.str   AT3G05500   Rubber elongation factor protein (REF) 
 ath-m.4.tis   AT3G05500   Rubber elongation factor protein (REF) 
 ath-u.5   AT2G47780   Rubber elongation factor protein (REF) 
 bra-r.6   103870817   REF/SRPP-like protein At3g05500 
 bra-r.6   103848941   REF/SRPP-like protein At3g05500 
 bra-r.6   103866345   REF/SRPP-like protein At2g47780 
 bna-r.1   125609134   REF/SRPP-like protein At3g05500 
 bna-r.1   125574798   REF/SRPP-like protein At3g05500 
 bna-r.1   106395615   REF/SRPP-like protein At2g47780 
 cit-r.1   102612439   REF/SRPP-like protein At3g05500 
 cit-r.1   102619601   stress-related protein 
 gma-u.5   100808646   metal response element-binding transcription factor PvMTF-1-like 
 gma-u.5   100527222   rubber elongation factor superfamily protein 
 vvi-u.5   100251998   stress-related protein 
 vvi-u.5   100240929   stress-related protein 
 ppo-u.5   7481735   REF/SRPP-like protein At3g05500 
 ppo-u.5   18098673   REF/SRPP-like protein At3g05500 
 mtr-u.5   11423939   stress-related protein 
 sly-u.5   101253428   stress-related protein 
 sly-u.5   101250630   stress-related protein 
 sot-r.1   107060832   REF/SRPP-like protein At3g05500 
 sot-r.1   102605278   stress-related protein 
 sot-r.1   102597902   stress-related protein 
 nta-r.1   107797963   stress-related protein-like 
 nta-r.1   107776298   REF/SRPP-like protein At3g05500 
 nta-r.1   107803550   stress-related protein-like 
 osa-u.5   4337833   REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 
 osa-u.5   4344249   REF/SRPP-like protein At3g05500 
 zma-u.5   100283461   uncharacterized LOC100283461 
 zma-u.5   100279884   uncharacterized LOC100279884 
 tae-r.2   123051614   stress-related protein 
 tae-r.2   123112926   REF/SRPP-like protein OsI_017815 
 tae-r.2   123135958   REF/SRPP-like protein OsI_017815 
 hvu-r.1   123425585   REF/SRPP-like protein OsI_017815 
 hvu-r.1   123424772   stress-related protein-like 
 sbi-r.1   8075987   REF/SRPP-like protein OsI_017815 
 sbi-r.1   8078532   stress-related protein 
 bdi-r.1   100846712   REF/SRPP-like protein OsI_017815 
 bdi-r.1   100838427   stress-related protein 

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Top 50 coexpressed genes to AT3G05500 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G05500 (ath-u.5 coexpression data)

CoexMap"819715"


athAT3G05500 | Entrez gene ID : 819715      
Species ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre ghi
Paralog 10 3 3 2 2 2 2 1 2 3 3 2 2 3 2 2 2 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0080186 [list] [network] developmental vegetative growth  (11 genes)  IMP  
GO:0034389 [list] [network] lipid droplet organization  (12 genes)  IMP  
GO:0019915 [list] [network] lipid storage  (14 genes)  IDA  
GO:1902584 [list] [network] positive regulation of response to water deprivation  (19 genes)  IMP  
GO:0045927 [list] [network] positive regulation of growth  (39 genes)  IMP  
GO CC
GO:0005811 [list] [network] lipid droplet  (54 genes)  IDA  
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001326093.1 [sequence] [blastp]
NP_187201.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 1,  mito 1,  chlo_mito 1,  E.R._plas 1,  plas 1,  E.R. 1  (predict for NP_001326093.1)
cyto 5,  mito 2,  chlo 1,  mito_plas 1  (predict for NP_187201.1)
Subcellular
localization
TargetP
scret 3  (predict for NP_001326093.1)
other 8  (predict for NP_187201.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G05500
ath-r.7
for
AT3G05500
ath-m.9
for
AT3G05500
ath-e.2
for
AT3G05500
ath-m.4.bio
for
AT3G05500
ath-m.4.hor
for
AT3G05500
ath-m.4.lig
for
AT3G05500
ath-m.4.str
for
AT3G05500
ath-m.4.tis
for
AT3G05500
ath-u.5
for
AT2G47780
bra-r.6
for
103870817
bra-r.6
for
103848941
bra-r.6
for
103866345
bna-r.1
for
125609134
bna-r.1
for
125574798
bna-r.1
for
106395615
cit-r.1
for
102612439
cit-r.1
for
102619601
gma-u.5
for
100808646
gma-u.5
for
100527222
vvi-u.5
for
100251998
vvi-u.5
for
100240929
ppo-u.5
for
7481735
ppo-u.5
for
18098673
mtr-u.5
for
11423939
sly-u.5
for
101253428
sly-u.5
for
101250630
sot-r.1
for
107060832
sot-r.1
for
102605278
sot-r.1
for
102597902
nta-r.1
for
107797963
nta-r.1
for
107776298
nta-r.1
for
107803550
osa-u.5
for
4337833
osa-u.5
for
4344249
zma-u.5
for
100283461
zma-u.5
for
100279884
tae-r.2
for
123051614
tae-r.2
for
123112926
tae-r.2
for
123135958
hvu-r.1
for
123425585
hvu-r.1
for
123424772
sbi-r.1
for
8075987
sbi-r.1
for
8078532
bdi-r.1
for
100846712
bdi-r.1
for
100838427


Ortholog ID: 2896
Species ath ath bra bra bra bna bna bna ghi cit cit gma gma vvi vvi ppo ppo mtr sly sly sot sot sot nta nta nta osa osa zma zma tae tae tae hvu hvu sbi sbi bdi bdi
Symbol AT3G05500 AT2G47780 LOC103870817 LOC103848941 LOC103866345 LOC125574798 LOC106382219 LOC106453052 LOC107887656 LOC102612439 LOC102619601 LOC100808646 LOC100527222 LOC100251998 LOC100240929 LOC7481735 LOC18098673 LOC11423939 LOC101253428 LOC101250630 LOC107060832 LOC102605278 LOC102597902 LOC107776298 LOC107803550 LOC107827582 LOC4337833 LOC4344249 LOC100283461 LOC100279884 LOC123051614 LOC123187547 LOC123191454 LOC123425585 LOC123424772 LOC8075987 LOC8078532 LOC100846712 LOC100838427
Function* Rubber elongation factor protein (REF) Rubber elongation factor protein (REF) REF/SRPP-like protein At3g05500 REF/SRPP-like protein At3g05500 REF/SRPP-like protein At2g47780 REF/SRPP-like protein At3g05500 REF/SRPP-like protein At3g05500 REF/SRPP-like protein At3g05500 REF/SRPP-like protein At3g05500 REF/SRPP-like protein At3g05500 stress-related protein metal response element-binding transcription factor PvMTF-1-like rubber elongation factor superfamily protein stress-related protein stress-related protein REF/SRPP-like protein At3g05500 REF/SRPP-like protein At3g05500 stress-related protein stress-related protein stress-related protein REF/SRPP-like protein At3g05500 stress-related protein stress-related protein REF/SRPP-like protein At3g05500 stress-related protein-like REF/SRPP-like protein At3g05500 REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 REF/SRPP-like protein At3g05500 uncharacterized LOC100283461 uncharacterized LOC100279884 stress-related protein stress-related protein REF/SRPP-like protein OsI_017815 REF/SRPP-like protein OsI_017815 stress-related protein-like REF/SRPP-like protein OsI_017815 stress-related protein REF/SRPP-like protein OsI_017815 stress-related protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04016 MAPK signaling pathway - plant 3
ath04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 4
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra01200 Carbon metabolism 3
bra00640 Propanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03250 Viral life cycle - HIV-1 2
bna03272 Virion - Hepatitis viruses 2
bna04144 Endocytosis 2
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00040 Pentose and glucuronate interconversions 2
bna00053 Ascorbate and aldarate metabolism 2
bna00520 Amino sugar and nucleotide sugar metabolism 2
bna00541 Biosynthesis of various nucleotide sugars 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 5
ghi03272 Virion - Hepatitis viruses 4
ghi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
cit04144 Endocytosis 3
cit00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 6
gma03040 Spliceosome 3
gma04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00051 Fructose and mannose metabolism 2
gma00541 Biosynthesis of various nucleotide sugars 2
gma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 4
sly00670 One carbon pool by folate 2
sly01230 Biosynthesis of amino acids 2
sly01240 Biosynthesis of cofactors 2
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 6
nta03272 Virion - Hepatitis viruses 4
nta03250 Viral life cycle - HIV-1 2
nta00965 Betalain biosynthesis 2
nta04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 6
nta03272 Virion - Hepatitis viruses 4
nta03250 Viral life cycle - HIV-1 2
nta00965 Betalain biosynthesis 2
nta04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 5
osa03040 Spliceosome 4
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00061 Fatty acid biosynthesis 3
tae01040 Biosynthesis of unsaturated fatty acids 3
tae01212 Fatty acid metabolism 3
tae00860 Porphyrin metabolism 2
tae00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00061 Fatty acid biosynthesis 3
tae01040 Biosynthesis of unsaturated fatty acids 3
tae01212 Fatty acid metabolism 3
tae00860 Porphyrin metabolism 2
tae00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00350 Tyrosine metabolism 2
bdi00950 Isoquinoline alkaloid biosynthesis 2
bdi00592 alpha-Linolenic acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819715 819390 103870817 103848941 103866345 125574798 106382219 106453052 107887656 102612439 102619601 100808646 100527222 100251998 100240929 7481735 18098673 11423939 101253428 101250630 107060832 102605278 102597902 107776298 107803550 107827582 4337833 4344249 100283461 100279884 123051614 123187547 123191454 123425585 123424772 8075987 8078532 100846712 100838427
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