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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G05545   RING/U-box superfamily protein 
 ath-r.7   AT3G05545   RING/U-box superfamily protein 
 ath-e.2   AT3G05545   RING/U-box superfamily protein 
 gma-u.5   100789014   E3 ubiquitin-protein ligase RFI2 
 gma-u.5   100798107   E3 ubiquitin-protein ligase RFI2 
 gma-u.5   100807331   E3 ubiquitin-protein ligase RFI2 
 vvi-u.5   100267498   E3 ubiquitin-protein ligase RFI2 
 vvi-u.5   100251003   E3 ubiquitin-protein ligase RFI2 
 ppo-u.5   18098660   E3 ubiquitin-protein ligase RFI2 
 ppo-u.5   7478939   E3 ubiquitin-protein ligase RFI2 
 mtr-u.5   11434170   E3 ubiquitin-protein ligase RFI2 
 mtr-u.5   11407185   E3 ubiquitin-protein ligase RFI2 
 sly-u.5   AdBiL   E3 ubiquitin ligase AdBiL 
 osa-u.5   4326477   E3 ubiquitin-protein ligase IPI1-like 
 osa-u.5   4337844   E3 ubiquitin-protein ligase IPI1-like 
 zma-u.5   100191616   uncharacterized LOC100191616 
 zma-u.5   100280330   uncharacterized LOC100280330 
 zma-u.5   100381535   uncharacterized LOC100381535 

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Top 50 coexpressed genes to AT3G05545 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G05545 (ath-u.5 coexpression data)

CoexMap"819720"


athAT3G05545 | Entrez gene ID : 819720      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 3 2 2 2 1 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016567 [list] [network] protein ubiquitination  (170 genes)  IDA  
GO CC
GO:0005829 [list] [network] cytosol  (2593 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (268 genes)  IDA  
Protein NP_850517.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_850517.1)
Subcellular
localization
TargetP
other 9  (predict for NP_850517.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G05545

.
ath-r.7
for
AT3G05545

.
ath-e.2
for
AT3G05545

.
gma-u.5
for
100789014

.
gma-u.5
for
100798107

.
gma-u.5
for
100807331

.
vvi-u.5
for
100267498

.
vvi-u.5
for
100251003

.
ppo-u.5
for
18098660

.
ppo-u.5
for
7478939

.
mtr-u.5
for
11434170

.
mtr-u.5
for
11407185

.
sly-u.5
for
AdBiL

.
osa-u.5
for
4326477

.
osa-u.5
for
4337844

.
zma-u.5
for
100191616

.
zma-u.5
for
100280330

.
zma-u.5
for
100381535

.


Ortholog ID: 3569
Species ath gma gma sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sbi sot cit cit bdi nta nta
Symbol AT3G05545 LOC100789014 LOC100815923 AdBiL LOC4326477 LOC4337844 LOC100280330 LOC100381535 LOC103870813 LOC103859098 LOC100251003 LOC100267498 LOC7478939 LOC18098660 LOC11407185 LOC11434170 LOC123180549 LOC123191574 LOC123425772 LOC107919886 LOC107893283 LOC111206216 LOC111214161 LOC8075337 LOC8069529 LOC102581385 LOC102615689 LOC102624227 LOC100841837 LOC107784866 LOC107831015
Function* RING/U-box superfamily protein E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin ligase AdBiL E3 ubiquitin-protein ligase IPI1-like E3 ubiquitin-protein ligase IPI1-like uncharacterized LOC100280330 uncharacterized LOC100381535 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2-like E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase IPI1-like E3 ubiquitin-protein ligase RFI2-like uncharacterized LOC8075337 uncharacterized LOC8069529 uncharacterized LOC102581385 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 2
ath05100 Bacterial invasion of epithelial cells 2
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 3
gma03018 RNA degradation 2
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
zma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 3
vvi01200 Carbon metabolism 2
vvi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
ppo04141 Protein processing in endoplasmic reticulum 3
ppo04075 Plant hormone signal transduction 2
ppo03083 Polycomb repressive complex 2
ppo00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
ppo00562 Inositol phosphate metabolism 2
ppo04070 Phosphatidylinositol signaling system 2
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 4
sot03015 mRNA surveillance pathway 3
sot04136 Autophagy - other 3
sot04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00510 N-Glycan biosynthesis 2
cit00513 Various types of N-glycan biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819720 100789014 100815923 101256712 4326477 4337844 100280330 100381535 103870813 103859098 100251003 100267498 7478939 18098660 11407185 11434170 123180549 123191574 123425772 107919886 107893283 111206216 111214161 8075337 8069529 102581385 102615689 102624227 100841837 107784866 107831015
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