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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G06040   Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein 
 ath-r.7   AT3G06040   Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein 
 ath-m.9   AT3G06040   Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein 
 ath-e.2   AT3G06040   Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein 
 ath-m.4.bio   AT3G06040   Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein 
 ath-m.4.hor   AT3G06040   Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein 
 ath-m.4.lig   AT3G06040   Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein 
 ath-m.4.str   AT3G06040   Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein 
 ath-m.4.tis   AT3G06040   Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein 
 bra-r.6   103854447   50S ribosomal protein L7/L12 
 bna-r.1   106386449   50S ribosomal protein L7/L12-like 
 bna-r.1   106400581   50S ribosomal protein L7/L12 
 bna-r.1   111214072   50S ribosomal protein L7/L12 
 ghi-r.1   107939791   50S ribosomal protein L7/L12 
 ghi-r.1   107939288   50S ribosomal protein L7/L12 
 cit-r.1   102608536   uncharacterized LOC102608536 
 gma-u.5   100816926   50S ribosomal protein L7/L12 
 gma-u.5   100306392   50S ribosomal protein L7/L12-like 
 vvi-u.5   100246777   uncharacterized LOC100246777 
 ppo-u.5   7457740   uncharacterized LOC7457740 
 mtr-u.5   25486332   50S ribosomal protein L7/L12 
 sly-u.5   101248704   uncharacterized LOC101248704 
 sot-r.1   102598332   50S ribosomal protein L7/L12 
 nta-r.1   107773238   uncharacterized LOC107773238 
 osa-u.5   4328635   uncharacterized LOC4328635 
 zma-u.5   100216725   Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein 
 zma-u.5   100192505   50S ribosomal protein L7/L12-like 
 tae-r.2   123136688   50S ribosomal protein L7/L12 
 tae-r.2   123144177   50S ribosomal protein L7/L12 
 tae-r.2   123132613   50S ribosomal protein L7/L12 
 hvu-r.1   123402103   50S ribosomal protein L7/L12 
 sbi-r.1   8082909   50S ribosomal protein L12, chloroplastic 
 bdi-r.1   100839005   50S ribosomal protein L7/L12 

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Top 50 coexpressed genes to AT3G06040 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G06040 (ath-u.5 coexpression data)

CoexMap"819777"


athAT3G06040 | Entrez gene ID : 819777      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 2 1 2 1 1 1 1 1 1 1 2 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03010 [list] [network] Ribosome (394 genes)
GO BP
GO:0006412 [list] [network] translation  (926 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
Protein NP_001078113.1 [sequence] [blastp]
NP_187255.1 [sequence] [blastp]
NP_974234.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 2  (predict for NP_001078113.1)
chlo 8,  mito 2  (predict for NP_187255.1)
chlo 8,  mito 2  (predict for NP_974234.1)
Subcellular
localization
TargetP
mito 6,  other 4  (predict for NP_001078113.1)
mito 6,  other 4  (predict for NP_187255.1)
mito 6,  other 4  (predict for NP_974234.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G06040
ath-r.7
for
AT3G06040
ath-m.9
for
AT3G06040
ath-e.2
for
AT3G06040
ath-m.4.bio
for
AT3G06040
ath-m.4.hor
for
AT3G06040
ath-m.4.lig
for
AT3G06040
ath-m.4.str
for
AT3G06040
ath-m.4.tis
for
AT3G06040
bra-r.6
for
103854447
bna-r.1
for
106386449
bna-r.1
for
106400581
bna-r.1
for
111214072
ghi-r.1
for
107939791
ghi-r.1
for
107939288
cit-r.1
for
102608536
gma-u.5
for
100816926
gma-u.5
for
100306392
vvi-u.5
for
100246777
ppo-u.5
for
7457740
mtr-u.5
for
25486332
sly-u.5
for
101248704
sot-r.1
for
102598332
nta-r.1
for
107773238
osa-u.5
for
4328635
zma-u.5
for
100216725
zma-u.5
for
100192505
tae-r.2
for
123136688
tae-r.2
for
123144177
tae-r.2
for
123132613
hvu-r.1
for
123402103
sbi-r.1
for
8082909
bdi-r.1
for
100839005


Ortholog ID: 9451
Species ath bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta osa zma zma tae tae tae hvu sbi bdi
Symbol AT3G06040 LOC103854447 LOC106386449 LOC106400581 LOC111214072 LOC107939791 LOC107939288 LOC102608536 LOC100816926 LOC100306392 LOC100246777 LOC7457740 LOC25486332 LOC101248704 LOC102598332 LOC107773238 LOC4328635 LOC100216725 LOC100192505 LOC123136688 LOC123144177 LOC123132613 LOC123402103 LOC8082909 LOC100839005
Function* Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein 50S ribosomal protein L7/L12 50S ribosomal protein L7/L12-like 50S ribosomal protein L7/L12 50S ribosomal protein L7/L12 50S ribosomal protein L7/L12 50S ribosomal protein L7/L12 uncharacterized LOC102608536 50S ribosomal protein L7/L12 50S ribosomal protein L7/L12-like uncharacterized LOC100246777 uncharacterized LOC7457740 50S ribosomal protein L7/L12 uncharacterized LOC101248704 50S ribosomal protein L7/L12 uncharacterized LOC107773238 uncharacterized LOC4328635 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein 50S ribosomal protein L7/L12-like 50S ribosomal protein L7/L12 50S ribosomal protein L7/L12 50S ribosomal protein L7/L12 50S ribosomal protein L7/L12 50S ribosomal protein L12, chloroplastic 50S ribosomal protein L7/L12
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 6
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 7
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
sot03040 Spliceosome 2
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00061 Fatty acid biosynthesis 2
zma01040 Biosynthesis of unsaturated fatty acids 2
zma01212 Fatty acid metabolism 2
zma00500 Starch and sucrose metabolism 2
zma04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae03420 Nucleotide excision repair 2
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 14
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
sbi00230 Purine metabolism 2
sbi01232 Nucleotide metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
bdi03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819777 103854447 106386449 106400581 111214072 107939791 107939288 102608536 100816926 100306392 100246777 7457740 25486332 101248704 102598332 107773238 4328635 100216725 100192505 123136688 123144177 123132613 123402103 8082909 100839005
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