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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G07550   RNI-like superfamily protein 
 ath-r.7   AT3G07550   RNI-like superfamily protein 
 ath-m.9   AT3G07550   RNI-like superfamily protein 
 ath-e.2   AT3G07550   RNI-like superfamily protein 
 ath-m.4.bio   AT3G07550   RNI-like superfamily protein 
 ath-m.4.hor   AT3G07550   RNI-like superfamily protein 
 ath-m.4.lig   AT3G07550   RNI-like superfamily protein 
 ath-m.4.str   AT3G07550   RNI-like superfamily protein 
 ath-m.4.tis   AT3G07550   RNI-like superfamily protein 
 gma-u.5   102667402   F-box/LRR-repeat protein 12 
 ppo-u.5   18103342   F-box/LRR-repeat protein 12 
 mtr-u.5   25500769   F-box/LRR-repeat protein 12 
 sly-u.5   101253383   F-box/LRR-repeat protein 12 
 osa-u.5   4350237   F-box/LRR-repeat protein 12 
 zma-u.5   100501389   uncharacterized LOC100501389 

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Top 50 coexpressed genes to AT3G07550 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G07550 (ath-u.5 coexpression data)

CoexMap"819944"


athAT3G07550 | Entrez gene ID : 819944      
Species ath gma ppo mtr sly osa zma tae hvu ghi bdi cit vvi bra cre sbi bna nta sot
Paralog 9 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (219 genes)  TAS  
GO CC
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
Protein NP_001325806.1 [sequence] [blastp]
NP_566312.1 [sequence] [blastp]
NP_850534.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 2,  plas 1,  cysk 1,  golg 1,  golg_plas 1,  cysk_plas 1  (predict for NP_001325806.1)
cyto 6,  nucl 3  (predict for NP_566312.1)
cyto 6,  nucl 3  (predict for NP_850534.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001325806.1)
other 9  (predict for NP_566312.1)
other 9  (predict for NP_850534.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G07550

.
ath-r.7
for
AT3G07550

.
ath-m.9
for
AT3G07550

.
ath-e.2
for
AT3G07550

.
ath-m.4.bio
for
AT3G07550

.
ath-m.4.hor
for
AT3G07550

.
ath-m.4.lig
for
AT3G07550

.
ath-m.4.str
for
AT3G07550

.
ath-m.4.tis
for
AT3G07550

.
gma-u.5
for
102667402

.
ppo-u.5
for
18103342

.
mtr-u.5
for
25500769

.
sly-u.5
for
101253383

.
osa-u.5
for
4350237

.
zma-u.5
for
100501389

.


Ortholog ID: 10742
Species ath gma sly osa zma bra ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT3G07550 LOC102667402 LOC101253383 LOC4350237 LOC100501389 LOC103870657 LOC18103342 LOC25500769 LOC123096182 LOC123086787 LOC123447817 LOC107912497 LOC107924793 LOC106401407 LOC106452935 LOC8057111 LOC102587561 LOC102618197 LOC100840564 LOC107811863 LOC107767506
Function* RNI-like superfamily protein F-box/LRR-repeat protein 12 F-box/LRR-repeat protein 12 F-box/LRR-repeat protein 12 uncharacterized LOC100501389 F-box/LRR-repeat protein 12 F-box/LRR-repeat protein 12 F-box/LRR-repeat protein 12 F-box/LRR-repeat protein 12 F-box/LRR-repeat protein 12 F-box/LRR-repeat protein 12 F-box/LRR-repeat protein 12 F-box/LRR-repeat protein 12 F-box/LRR-repeat protein 12-like F-box/LRR-repeat protein 12 F-box/LRR-repeat protein 12 F-box/LRR-repeat protein 12 F-box/LRR-repeat protein 12 F-box/LRR-repeat protein 12 F-box/LRR-repeat protein 12 F-box/LRR-repeat protein 12-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00600 Sphingolipid metabolism 2
ath04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00410 beta-Alanine metabolism 3
mtr00240 Pyrimidine metabolism 2
mtr00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 3
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi00910 Nitrogen metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 4
bna00630 Glyoxylate and dicarboxylate metabolism 4
bna01200 Carbon metabolism 4
bna00790 Folate biosynthesis 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 4
bna00630 Glyoxylate and dicarboxylate metabolism 4
bna01200 Carbon metabolism 4
bna00790 Folate biosynthesis 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00906 Carotenoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819944 102667402 101253383 4350237 100501389 103870657 18103342 25500769 123096182 123086787 123447817 107912497 107924793 106401407 106452935 8057111 102587561 102618197 100840564 107811863 107767506
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