ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT3G08030	DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642)
ath-r.7	AT3G08030	DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642)
ath-m.9	AT3G08030	DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642)
ath-e.2	AT3G08030	DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642)
ath-m.4.bio	AT3G08030	DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642)
ath-m.4.hor	AT3G08030	DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642)
ath-m.4.lig	AT3G08030	DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642)
ath-m.4.str	AT3G08030	DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642)
ath-m.4.tis	AT3G08030	DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642)
ath-u.5	AT2G41800	imidazolonepropionase (Protein of unknown function, DUF642)
ath-u.5	AT2G41810	imidazolonepropionase (Protein of unknown function, DUF642)
bra-r.6	103866589	uncharacterized LOC103866589
bra-r.6	103848900	uncharacterized LOC103848900
bna-r.1	106452857	uncharacterized LOC106452857
bna-r.1	BNAC05G44040D	uncharacterized BNAC05G44040D
bna-r.1	125585424	uncharacterized LOC125585424
ghi-r.1	107889403	uncharacterized LOC107889403
ghi-r.1	107891310	uncharacterized LOC107891310
ghi-r.1	107900759	uncharacterized LOC107900759
cit-r.1	102610407	hypothetical protein
gma-u.5	100804119	uncharacterized LOC100804119
gma-u.5	100812299	uncharacterized LOC100812299
gma-u.5	100796094	uncharacterized LOC100796094
vvi-u.5	100257236	protein DUF642 L-GALACTONO-1,4-LACTONE-RESPONSIVE GENE 2
vvi-u.5	100258445	protein DUF642 L-GALACTONO-1,4-LACTONE-RESPONSIVE GENE 2
ppo-u.5	7484016	protein DUF642 L-GALACTONO-1,4-LACTONE-RESPONSIVE GENE 2
ppo-u.5	7480067	protein DUF642 L-GALACTONO-1,4-LACTONE-RESPONSIVE GENE 2
mtr-u.5	11441906	uncharacterized LOC11441906
mtr-u.5	11446162	uncharacterized LOC11446162
mtr-u.5	11446164	uncharacterized LOC11446164
sly-u.5	101245049	protein TEEBE
sly-u.5	101251618	protein TEEBE
sly-u.5	101245348	protein TEEBE-like
sot-r.1	102582371	uncharacterized LOC102582371
sot-r.1	102603851	uncharacterized LOC102603851
sot-r.1	102579762	uncharacterized LOC102579762
nta-r.1	107824802	protein TEEBE-like
nta-r.1	107762645	protein TEEBE
nta-r.1	107803988	protein TEEBE
osa-u.5	4334511	protein TEEBE
zma-u.5	100277106	uncharacterized LOC100277106
tae-r.2	123113854	uncharacterized LOC123113854
tae-r.2	123123360	uncharacterized LOC123123360
tae-r.2	123105547	uncharacterized LOC123105547
hvu-r.1	123452880	uncharacterized LOC123452880
sbi-r.1	8081206	uncharacterized LOC8081206
bdi-r.1	100845370	uncharacterized LOC100845370

Top 50 coexpressed genes to AT3G08030 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G08030 (ath-u.5 coexpression data)

CoexMap"819994"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005643 [list] [network] nuclear pore	(18 genes)	IDA
GO:0099503 [list] [network] secretory vesicle	(172 genes)	HDA
GO:0009505 [list] [network] plant-type cell wall	(504 genes)	HDA
GO:0005886 [list] [network] plasma membrane	(2598 genes)	HDA
GO:0009507 [list] [network] chloroplast	(5014 genes)	ISM

GO MF

Protein

NP_566328.1 [sequence] [blastp]
NP_974254.1 [sequence] [blastp]

Subcellular
localization
wolf

extr 6, cyto 1, E.R. 1, cyto_E.R. 1	(predict for NP_566328.1)
cyto 8, pero 1	(predict for NP_974254.1)

Subcellular
localization
TargetP

scret 9	(predict for NP_566328.1)
other 8	(predict for NP_974254.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT3G08030	ath-r.7 for AT3G08030	ath-m.9 for AT3G08030	ath-e.2 for AT3G08030	ath-m.4.bio for AT3G08030	ath-m.4.hor for AT3G08030	ath-m.4.lig for AT3G08030	ath-m.4.str for AT3G08030	ath-m.4.tis for AT3G08030	ath-u.5 for AT2G41800	ath-u.5 for AT2G41810	bra-r.6 for 103866589	bra-r.6 for 103848900	bna-r.1 for 106452857	bna-r.1 for BNAC05G44040D	bna-r.1 for 125585424	ghi-r.1 for 107889403	ghi-r.1 for 107891310	ghi-r.1 for 107900759	cit-r.1 for 102610407	gma-u.5 for 100804119	gma-u.5 for 100812299	gma-u.5 for 100796094	vvi-u.5 for 100257236	vvi-u.5 for 100258445	ppo-u.5 for 7484016	ppo-u.5 for 7480067	mtr-u.5 for 11441906	mtr-u.5 for 11446162	mtr-u.5 for 11446164	sly-u.5 for 101245049	sly-u.5 for 101251618	sly-u.5 for 101245348	sot-r.1 for 102582371	sot-r.1 for 102603851	sot-r.1 for 102579762	nta-r.1 for 107824802	nta-r.1 for 107762645	nta-r.1 for 107803988	osa-u.5 for 4334511	zma-u.5 for 100277106	tae-r.2 for 123113854	tae-r.2 for 123123360	tae-r.2 for 123105547	hvu-r.1 for 123452880	sbi-r.1 for 8081206	bdi-r.1 for 100845370

Ortholog

Ortholog ID: 2213

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642)

imidazolonepropionase (Protein of unknown function, DUF642)

uncharacterized LOC103848900

uncharacterized LOC103870618

uncharacterized LOC106452857

uncharacterized LOC125585424

uncharacterized LOC106453329

uncharacterized LOC107900759

uncharacterized LOC121219852

uncharacterized LOC107934018

hypothetical protein

uncharacterized LOC100804119

uncharacterized LOC100812299

uncharacterized LOC100796094

protein DUF642 L-GALACTONO-1,4-LACTONE-RESPONSIVE GENE 2

uncharacterized LOC11446162

uncharacterized LOC11446164

uncharacterized LOC25479953

protein TEEBE

protein TEEBE-like

uncharacterized LOC102603851

uncharacterized LOC102579762

uncharacterized LOC102578783

protein TEEBE-like

protein TEEBE

uncharacterized LOC100277106

uncharacterized LOC123113854

uncharacterized LOC123123360

uncharacterized LOC123105547

uncharacterized LOC123452880

uncharacterized LOC8081206

uncharacterized LOC100845370

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00040	Pentose and glucuronate interconversions	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00051	Fructose and mannose metabolism	2
ghi00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00051	Fructose and mannose metabolism	2
ghi00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00040	Pentose and glucuronate interconversions	4
gma00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00520	Amino sugar and nucleotide sugar metabolism	2
gma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00040	Pentose and glucuronate interconversions	4
gma04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	3
sly00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00040	Pentose and glucuronate interconversions	2
nta00514	Other types of O-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00062	Fatty acid elongation	3
tae04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03030	DNA replication	4
sbi04145	Phagosome	4
sbi04517	IgSF CAM signaling	4
sbi04814	Motor proteins	4
sbi03430	Mismatch repair	3

Expression

Expression pattern

Entrez Gene ID^*

819994

818779

818780

103848900

103870618

106452857

125585424

106453329

107900759

121219852

107934018

102610407

100804119

100812299

100796094

100257236

100258445

7484016

7480067

7482294

11446162

11446164

25479953

101245049

101251618

101245348

102603851

102579762

102578783

107824802

107762645

107803988

4334511

100277106

123113854

123123360

123105547

123452880

8081206

100845370

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	2	3	3	1	3	2	2	3	3	3	3	1	1	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G08030 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G08030 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**