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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   HCF152   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-r.7   HCF152   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.9   HCF152   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-e.2   HCF152   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.bio   HCF152   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.hor   HCF152   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.lig   HCF152   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.str   HCF152   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.tis   HCF152   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100808587   pentatricopeptide repeat-containing protein At3g09650, chloroplastic 
 vvi-u.5   100248209   pentatricopeptide repeat-containing protein At3g09650, chloroplastic 
 ppo-u.5   7465297   pentatricopeptide repeat-containing protein At3g09650, chloroplastic 
 mtr-u.5   25484046   pentatricopeptide repeat-containing protein At3g09650, chloroplastic 
 sly-u.5   104649090   pentatricopeptide repeat-containing protein At3g09650, chloroplastic 
 osa-u.5   4349537   pentatricopeptide repeat-containing protein At3g09650, chloroplastic 
 osa-u.5   4351246   pentatricopeptide repeat-containing protein At3g09650, chloroplastic 
 zma-u.5   103651307   pentatricopeptide repeat-containing protein At3g09650, chloroplastic 

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Top 50 coexpressed genes to HCF152 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to HCF152 (ath-u.5 coexpression data)

CoexMap"820122"


athHCF152 | Entrez gene ID : 820122      
Species ath gma vvi ppo mtr sly osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 9 1 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006397 [list] [network] mRNA processing  (185 genes)  IMP  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_187576.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for NP_187576.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_187576.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
HCF152

.
ath-r.7
for
HCF152

.
ath-m.9
for
HCF152

.
ath-e.2
for
HCF152

.
ath-m.4.bio
for
HCF152

.
ath-m.4.hor
for
HCF152

.
ath-m.4.lig
for
HCF152

.
ath-m.4.str
for
HCF152

.
ath-m.4.tis
for
HCF152

.
gma-u.5
for
100808587

.
vvi-u.5
for
100248209

.
ppo-u.5
for
7465297

.
mtr-u.5
for
25484046

.
sly-u.5
for
104649090

.
osa-u.5
for
4349537

.
osa-u.5
for
4351246

.
zma-u.5
for
103651307

.


Ortholog ID: 10747
Species ath gma sly osa osa zma bra vvi ppo mtr tae tae hvu ghi bna bna cre sbi sot cit bdi nta nta
Symbol HCF152 LOC100808587 LOC104649090 LOC4351246 LOC4349537 LOC103651307 LOC103870526 LOC100248209 LOC7465297 LOC25484046 LOC123103244 LOC123120548 LOC123395927 LOC107940142 LOC106452759 LOC111215775 CHLRE_01g050500v5 LOC8063101 LOC102581364 LOC102625820 LOC100828935 LOC107821954 LOC107785212
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At3g09650, chloroplastic pentatricopeptide repeat-containing protein At3g09650, chloroplastic pentatricopeptide repeat-containing protein At3g09650, chloroplastic pentatricopeptide repeat-containing protein At3g09650, chloroplastic pentatricopeptide repeat-containing protein At3g09650, chloroplastic pentatricopeptide repeat-containing protein At3g09650, chloroplastic pentatricopeptide repeat-containing protein At3g09650, chloroplastic pentatricopeptide repeat-containing protein At3g09650, chloroplastic pentatricopeptide repeat-containing protein At3g09650, chloroplastic pentatricopeptide repeat-containing protein At3g09650, chloroplastic pentatricopeptide repeat-containing protein At3g09650, chloroplastic pentatricopeptide repeat-containing protein At3g09650, chloroplastic pentatricopeptide repeat-containing protein At3g09650, chloroplastic pentatricopeptide repeat-containing protein At3g09650, chloroplastic pentatricopeptide repeat-containing protein At3g09650, chloroplastic uncharacterized protein pentatricopeptide repeat-containing protein At3g09650, chloroplastic pentatricopeptide repeat-containing protein At3g09650, chloroplastic pentatricopeptide repeat-containing protein At3g09650, chloroplastic pentatricopeptide repeat-containing protein At3g09650, chloroplastic pentatricopeptide repeat-containing protein At3g09650, chloroplastic-like pentatricopeptide repeat-containing protein At3g09650, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 3
osa00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 4
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
ghi01240 Biosynthesis of cofactors 4
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00750 Vitamin B6 metabolism 2
bdi01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820122 100808587 104649090 4351246 4349537 103651307 103870526 100248209 7465297 25484046 123103244 123120548 123395927 107940142 106452759 111215775 5715738 8063101 102581364 102625820 100828935 107821954 107785212
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