ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT3G11780	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein
ath-r.7	AT3G11780	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein
ath-m.9	AT3G11780	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein
ath-e.2	AT3G11780	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein
ath-m.4.bio	AT3G11780	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein
ath-m.4.hor	AT3G11780	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein
ath-m.4.lig	AT3G11780	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein
ath-m.4.str	AT3G11780	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein
ath-m.4.tis	AT3G11780	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein
ath-u.5	AT3G44100	MD-2-related lipid recognition domain-containing protein
ath-u.5	AT5G06480	Immunoglobulin E-set superfamily protein
bra-r.6	103870309	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179
bra-r.6	103859408	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179
bna-r.1	106452498	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179
bna-r.1	106450397	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179
ghi-r.1	107900069	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179
ghi-r.1	107959231	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179
ghi-r.1	107899410	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179
cit-r.1	102626243	uncharacterized LOC102626243
cit-r.1	102631379	uncharacterized LOC102631379
cit-r.1	102625954	uncharacterized LOC102625954
gma-u.5	100500637	MD-2-related lipid recognition domain-containing protein
gma-u.5	100500058	uncharacterized LOC100500058
vvi-u.5	100257110	uncharacterized LOC100257110
vvi-u.5	100244437	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179-like
ppo-u.5	7455603	MD-2-related lipid-recognition protein ROSY1
ppo-u.5	7469934	uncharacterized LOC7469934
mtr-u.5	11439874	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179
mtr-u.5	11434684	phosphatidylglycerol/phosphatidylinositol transfer protein
mtr-u.5	25483672	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179
sly-u.5	101249001	uncharacterized LOC101249001
sly-u.5	101246488	uncharacterized LOC101246488
sot-r.1	102589595	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0278295
sot-r.1	102584076	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179
nta-r.1	107780549	uncharacterized LOC107780549
nta-r.1	107768217	uncharacterized LOC107768217
nta-r.1	107798808	uncharacterized LOC107798808
osa-u.5	4334363	MD-2-related lipid-recognition protein ROSY1
osa-u.5	4342446	MD-2-related lipid-recognition protein ROSY1
zma-u.5	100193299	ML domain protein
zma-u.5	100273402	uncharacterized LOC100273402
tae-r.2	123105331	MD-2-related lipid-recognition protein ROSY1
tae-r.2	123044971	MD-2-related lipid-recognition protein ROSY1
tae-r.2	123052837	MD-2-related lipid-recognition protein ROSY1
hvu-r.1	123452600	MD-2-related lipid-recognition protein ROSY1-like
hvu-r.1	123426237	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179
sbi-r.1	8084133	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179
sbi-r.1	8081138	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107
bdi-r.1	100840554	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179
bdi-r.1	100838414	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179
cre-r.1	CHLRE_14g630350v5	uncharacterized protein
cre-r.1	CHLRE_02g095098v5	uncharacterized protein

Top 50 coexpressed genes to AT3G11780 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G11780 (ath-u.5 coexpression data)

CoexMap"820352"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0099503 [list] [network] secretory vesicle	(172 genes)	HDA
GO:0000325 [list] [network] plant-type vacuole	(788 genes)	HDA
GO:0005576 [list] [network] extracellular region	(3158 genes)	ISM

GO MF

Protein

NP_001189862.1 [sequence] [blastp]
NP_566400.1 [sequence] [blastp]

Subcellular
localization
wolf

extr 6, vacu 1, chlo 1, cyto 1, mito 1, chlo_mito 1, E.R._vacu 1	(predict for NP_001189862.1)
extr 7, vacu 1, cyto 1, mito 1, E.R._vacu 1	(predict for NP_566400.1)

Subcellular
localization
TargetP

scret 9	(predict for NP_001189862.1)
scret 9	(predict for NP_566400.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT3G11780	ath-r.7 for AT3G11780	ath-m.9 for AT3G11780	ath-e.2 for AT3G11780	ath-m.4.bio for AT3G11780	ath-m.4.hor for AT3G11780	ath-m.4.lig for AT3G11780	ath-m.4.str for AT3G11780	ath-m.4.tis for AT3G11780	ath-u.5 for AT3G44100	ath-u.5 for AT5G06480	bra-r.6 for 103870309	bra-r.6 for 103859408	bna-r.1 for 106452498	bna-r.1 for 106450397	ghi-r.1 for 107900069	ghi-r.1 for 107959231	ghi-r.1 for 107899410	cit-r.1 for 102626243	cit-r.1 for 102631379	cit-r.1 for 102625954	gma-u.5 for 100500637	gma-u.5 for 100500058	vvi-u.5 for 100257110	vvi-u.5 for 100244437	ppo-u.5 for 7455603	ppo-u.5 for 7469934	mtr-u.5 for 11439874	mtr-u.5 for 11434684	mtr-u.5 for 25483672	sly-u.5 for 101249001	sly-u.5 for 101246488	sot-r.1 for 102589595	sot-r.1 for 102584076	nta-r.1 for 107780549	nta-r.1 for 107768217	nta-r.1 for 107798808	osa-u.5 for 4334363	osa-u.5 for 4342446	zma-u.5 for 100193299	zma-u.5 for 100273402	tae-r.2 for 123105331	tae-r.2 for 123044971	tae-r.2 for 123052837	hvu-r.1 for 123452600	hvu-r.1 for 123426237	sbi-r.1 for 8084133	sbi-r.1 for 8081138	bdi-r.1 for 100840554	bdi-r.1 for 100838414	cre-r.1 for CHLRE_14g630350v5	cre-r.1 for CHLRE_02g095098v5

Ortholog

Ortholog ID: 1622

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

MD-2-related lipid recognition domain-containing protein / ML domain-containing protein

MD-2-related lipid recognition domain-containing protein

Immunoglobulin E-set superfamily protein

putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179

uncharacterized LOC107889453

putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179

uncharacterized LOC102626243

uncharacterized LOC102631379

uncharacterized LOC102625954

uncharacterized LOC100500058

uncharacterized LOC100306050

phosphatidylglycerol/phosphatidylinositol transfer protein-like

uncharacterized LOC100257110

putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179-like

MD-2-related lipid-recognition protein ROSY1

uncharacterized LOC7469934

putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179

phosphatidylglycerol/phosphatidylinositol transfer protein

putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179

uncharacterized LOC101249001

uncharacterized LOC101246488

putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0278295

putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179

uncharacterized LOC107780549

uncharacterized LOC107768217

uncharacterized LOC107798808

MD-2-related lipid-recognition protein ROSY1

ML domain protein

uncharacterized LOC100273402

MD-2-related lipid-recognition protein ROSY1

MD-2-related lipid-recognition protein ROSY1-like

putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179

putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107

putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	3
ath04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04626	Plant-pathogen interaction	5
ghi04142	Lysosome	3
ghi00190	Oxidative phosphorylation	2
ghi04145	Phagosome	2
ghi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04626	Plant-pathogen interaction	5
ghi04142	Lysosome	3
ghi00190	Oxidative phosphorylation	2
ghi04145	Phagosome	2
ghi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	3
cit01240	Biosynthesis of cofactors	2
cit00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04136	Autophagy - other	8
gma00562	Inositol phosphate metabolism	2
gma04070	Phosphatidylinositol signaling system	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04136	Autophagy - other	2
vvi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00190	Oxidative phosphorylation	4
mtr04120	Ubiquitin mediated proteolysis	2
mtr00240	Pyrimidine metabolism	2
mtr00410	beta-Alanine metabolism	2
mtr00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	4
mtr04144	Endocytosis	2
mtr04145	Phagosome	2
mtr04148	Efferocytosis	2
mtr00240	Pyrimidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00100	Steroid biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	3
sly00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00970	Aminoacyl-tRNA biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	4
sot04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	5
nta00020	Citrate cycle (TCA cycle)	2
nta01200	Carbon metabolism	2
nta00562	Inositol phosphate metabolism	2
nta04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04136	Autophagy - other	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	7
zma00600	Sphingolipid metabolism	3
zma00220	Arginine biosynthesis	2
zma00250	Alanine, aspartate and glutamate metabolism	2
zma00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00940	Phenylpropanoid biosynthesis	3
tae00350	Tyrosine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00350	Tyrosine metabolism	4
tae00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00062	Fatty acid elongation	2
hvu01040	Biosynthesis of unsaturated fatty acids	2
hvu01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04145	Phagosome	5
bdi00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00240	Pyrimidine metabolism	2
cre00410	beta-Alanine metabolism	2
cre00770	Pantothenate and CoA biosynthesis	2
cre00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04142	Lysosome	3

Expression

Expression pattern

Entrez Gene ID^*

820352

823530

830536

103870309

103845979

103846989

106452498

106349367

106413834

107899410

107889453

107948578

102626243

102631379

102625954

100500058

100306050

100818265

100257110

100244437

7455603

7469934

11439874

11434684

25483672

101249001

101246488

102589595

102584076

107780549

107768217

107798808

4334363

4342446

100193299

100273402

123105331

123044971

123052837

123452600

123426237

8084133

8081138

100840554

100838414

5718360

5726738

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	2	2	3	3	2	2	2	3	2	2	3	2	2	3	2	2	2	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G11780 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G11780 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**