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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G19630   Radical SAM superfamily protein 
 ath-r.7   AT3G19630   Radical SAM superfamily protein 
 ath-m.9   AT3G19630   Radical SAM superfamily protein 
 ath-e.2   AT3G19630   Radical SAM superfamily protein 
 ath-m.4.bio   AT3G19630   Radical SAM superfamily protein 
 ath-m.4.hor   AT3G19630   Radical SAM superfamily protein 
 ath-m.4.lig   AT3G19630   Radical SAM superfamily protein 
 ath-m.4.str   AT3G19630   Radical SAM superfamily protein 
 ath-m.4.tis   AT3G19630   Radical SAM superfamily protein 
 bra-r.6   103859819   dual-specificity RNA methyltransferase RlmN 1 
 bna-r.1   106389263   dual-specificity RNA methyltransferase RlmN 
 bna-r.1   106424360   dual-specificity RNA methyltransferase RlmN 1 
 ghi-r.1   107886942   dual-specificity RNA methyltransferase RlmN 
 ghi-r.1   107908839   dual-specificity RNA methyltransferase RlmN 
 cit-r.1   102607675   hypothetical protein 
 gma-u.5   100804869   dual-specificity RNA methyltransferase RlmN 
 gma-u.5   100776283   dual-specificity RNA methyltransferase RlmN 
 vvi-u.5   100259962   ribosomal RNA large subunit methyltransferase N-like 
 ppo-u.5   7478653   uncharacterized LOC7478653 
 mtr-u.5   11435810   dual-specificity RNA methyltransferase RlmN 
 sly-u.5   101264767   uncharacterized LOC101264767 
 sot-r.1   102584921   dual-specificity RNA methyltransferase RlmN 
 nta-r.1   107785263   uncharacterized LOC107785263 
 nta-r.1   107773763   uncharacterized LOC107773763 
 osa-u.5   4331979   dual-specificity RNA methyltransferase RlmN 
 zma-u.5   100277741   uncharacterized LOC100277741 
 tae-r.2   123093085   dual-specificity RNA methyltransferase RlmN 
 tae-r.2   123084988   dual-specificity RNA methyltransferase RlmN 
 tae-r.2   123098359   dual-specificity RNA methyltransferase RlmN 
 hvu-r.1   123449399   dual-specificity RNA methyltransferase RlmN 
 sbi-r.1   8081868   dual-specificity RNA methyltransferase RlmN 
 bdi-r.1   100826487   dual-specificity RNA methyltransferase RlmN 
 cre-r.1   CHLRE_01g028450v5   uncharacterized protein 

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Top 50 coexpressed genes to AT3G19630 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G19630 (ath-u.5 coexpression data)

CoexMap"821500"


athAT3G19630 | Entrez gene ID : 821500      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0030488 [list] [network] tRNA methylation  (9 genes)  IEA  
GO:0070475 [list] [network] rRNA base methylation  (10 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0008173 [list] [network] RNA methyltransferase activity  (43 genes)  IEA  
Protein NP_188597.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  nucl 2  (predict for NP_188597.1)
Subcellular
localization
TargetP
other 8  (predict for NP_188597.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G19630
ath-r.7
for
AT3G19630
ath-m.9
for
AT3G19630
ath-e.2
for
AT3G19630
ath-m.4.bio
for
AT3G19630
ath-m.4.hor
for
AT3G19630
ath-m.4.lig
for
AT3G19630
ath-m.4.str
for
AT3G19630
ath-m.4.tis
for
AT3G19630
bra-r.6
for
103859819
bna-r.1
for
106389263
bna-r.1
for
106424360
ghi-r.1
for
107886942
ghi-r.1
for
107908839
cit-r.1
for
102607675
gma-u.5
for
100804869
gma-u.5
for
100776283
vvi-u.5
for
100259962
ppo-u.5
for
7478653
mtr-u.5
for
11435810
sly-u.5
for
101264767
sot-r.1
for
102584921
nta-r.1
for
107785263
nta-r.1
for
107773763
osa-u.5
for
4331979
zma-u.5
for
100277741
tae-r.2
for
123093085
tae-r.2
for
123084988
tae-r.2
for
123098359
hvu-r.1
for
123449399
sbi-r.1
for
8081868
bdi-r.1
for
100826487
cre-r.1
for
CHLRE_01g028450v5


Ortholog ID: 10098
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT3G19630 LOC103859819 LOC106389263 LOC106424360 LOC107886942 LOC107908839 LOC102607675 LOC100804869 LOC100776283 LOC100259962 LOC7478653 LOC11435810 LOC101264767 LOC102584921 LOC107785263 LOC107773763 LOC4331979 LOC100277741 LOC123093085 LOC123084988 LOC123098359 LOC123449399 LOC8081868 LOC100826487 CHLRE_01g028450v5
Function* Radical SAM superfamily protein dual-specificity RNA methyltransferase RlmN 1 dual-specificity RNA methyltransferase RlmN dual-specificity RNA methyltransferase RlmN 1 dual-specificity RNA methyltransferase RlmN dual-specificity RNA methyltransferase RlmN hypothetical protein dual-specificity RNA methyltransferase RlmN dual-specificity RNA methyltransferase RlmN ribosomal RNA large subunit methyltransferase N-like uncharacterized LOC7478653 dual-specificity RNA methyltransferase RlmN uncharacterized LOC101264767 dual-specificity RNA methyltransferase RlmN uncharacterized LOC107785263 uncharacterized LOC107773763 dual-specificity RNA methyltransferase RlmN uncharacterized LOC100277741 dual-specificity RNA methyltransferase RlmN dual-specificity RNA methyltransferase RlmN dual-specificity RNA methyltransferase RlmN dual-specificity RNA methyltransferase RlmN dual-specificity RNA methyltransferase RlmN dual-specificity RNA methyltransferase RlmN uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 2
bra03008 Ribosome biogenesis in eukaryotes 2
bra00620 Pyruvate metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 3
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 3
vvi04145 Phagosome 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03060 Protein export 2
sot03015 mRNA surveillance pathway 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta03082 ATP-dependent chromatin remodeling 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
zma03040 Spliceosome 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 6
tae03083 Polycomb repressive complex 6
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 6
tae03083 Polycomb repressive complex 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 6
tae03083 Polycomb repressive complex 6
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
sbi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
cre03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821500 103859819 106389263 106424360 107886942 107908839 102607675 100804869 100776283 100259962 7478653 11435810 101264767 102584921 107785263 107773763 4331979 100277741 123093085 123084988 123098359 123449399 8081868 100826487 5715328
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