ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT3G20350	actin cytoskeleton-regulatory complex pan-like protein
ath-r.7	AT3G20350	actin cytoskeleton-regulatory complex pan-like protein
ath-e.2	AT3G20350	actin cytoskeleton-regulatory complex pan-like protein
ath-u.5	AT1G50660	actin cytoskeleton-regulatory complex pan-like protein
bra-r.6	103869331	uncharacterized protein At5g41620
bra-r.6	103871328	uncharacterized LOC103871328
bna-r.1	125588699	uncharacterized LOC125588699
bna-r.1	111207026	uncharacterized LOC111207026
bna-r.1	106357499	uncharacterized protein At5g41620-like
ghi-r.1	107920070	uncharacterized LOC107920070
ghi-r.1	107933426	probable DNA double-strand break repair Rad50 ATPase
ghi-r.1	107939858	uncharacterized LOC107939858
cit-r.1	102620352	uncharacterized LOC102620352
cit-r.1	102607593	uncharacterized LOC102607593
gma-u.5	100795752	myosin-11
gma-u.5	100795388	uncharacterized LOC100795388
gma-u.5	100801304	uncharacterized LOC100801304
vvi-u.5	100255542	uncharacterized LOC100255542
vvi-u.5	100245273	uncharacterized LOC100245273
ppo-u.5	7479057	uncharacterized LOC7479057
ppo-u.5	7471864	uncharacterized LOC7471864
mtr-u.5	11440498	uncharacterized LOC11440498
mtr-u.5	11432489	uncharacterized LOC11432489
sly-u.5	101256651	uncharacterized LOC101256651
sly-u.5	101248992	uncharacterized LOC101248992
sot-r.1	102581959	uncharacterized LOC102581959
sot-r.1	102605289	uncharacterized LOC102605289
nta-r.1	107787015	uncharacterized LOC107787015
nta-r.1	107790930	uncharacterized LOC107790930
nta-r.1	107817516	uncharacterized LOC107817516
osa-u.5	4339217	uncharacterized LOC4339217
osa-u.5	4344849	uncharacterized LOC4344849
osa-u.5	107276041	uncharacterized LOC107276041
zma-u.5	103645923	uncharacterized LOC103645923
zma-u.5	109941669	uncharacterized LOC109941669
tae-r.2	123138370	uncharacterized LOC123138370
tae-r.2	123159235	cingulin
tae-r.2	123046785	myosin-3
hvu-r.1	123427902	myosin-3-like
hvu-r.1	123443590	uncharacterized LOC123443590
hvu-r.1	123410663	synaptonemal complex protein 1-like
sbi-r.1	8082388	uncharacterized LOC8082388
sbi-r.1	8071136	CAP-Gly domain-containing linker protein 1
sbi-r.1	8066809	uncharacterized LOC8066809
bdi-r.1	100844760	uncharacterized LOC100844760
bdi-r.1	100825880	CAP-Gly domain-containing linker protein 1
bdi-r.1	100822340	cingulin

Top 50 coexpressed genes to AT3G20350 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G20350 (ath-u.5 coexpression data)

CoexMap"821579"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005737 [list] [network] cytoplasm

(14000 genes)

ISM

GO MF

Protein

NP_188670.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, pero 3, chlo 2

(predict for NP_188670.1)

Subcellular
localization
TargetP

chlo 9

(predict for NP_188670.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT3G20350	ath-r.7 for AT3G20350	ath-e.2 for AT3G20350	ath-u.5 for AT1G50660	bra-r.6 for 103869331	bra-r.6 for 103871328	bna-r.1 for 125588699	bna-r.1 for 111207026	bna-r.1 for 106357499	ghi-r.1 for 107920070	ghi-r.1 for 107933426	ghi-r.1 for 107939858	cit-r.1 for 102620352	cit-r.1 for 102607593	gma-u.5 for 100795752	gma-u.5 for 100795388	gma-u.5 for 100801304	vvi-u.5 for 100255542	vvi-u.5 for 100245273	ppo-u.5 for 7479057	ppo-u.5 for 7471864	mtr-u.5 for 11440498	mtr-u.5 for 11432489	sly-u.5 for 101256651	sly-u.5 for 101248992	sot-r.1 for 102581959	sot-r.1 for 102605289	nta-r.1 for 107787015	nta-r.1 for 107790930	nta-r.1 for 107817516	osa-u.5 for 4339217	osa-u.5 for 4344849	osa-u.5 for 107276041	zma-u.5 for 103645923	zma-u.5 for 109941669	tae-r.2 for 123138370	tae-r.2 for 123159235	tae-r.2 for 123046785	hvu-r.1 for 123427902	hvu-r.1 for 123443590	hvu-r.1 for 123410663	sbi-r.1 for 8082388	sbi-r.1 for 8071136	sbi-r.1 for 8066809	bdi-r.1 for 100844760	bdi-r.1 for 100825880	bdi-r.1 for 100822340

Ortholog

Ortholog ID: 2220

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

actin cytoskeleton-regulatory complex pan-like protein

uncharacterized protein At5g41620

uncharacterized LOC103871328

uncharacterized LOC125588699

uncharacterized LOC111207026

uncharacterized protein At5g41620-like

uncharacterized LOC107939858

uncharacterized LOC121212489

uncharacterized LOC107903325

uncharacterized LOC102620352

uncharacterized LOC102607593

myosin-11

uncharacterized LOC100801304

uncharacterized protein At5g41620

uncharacterized LOC100255542

uncharacterized LOC100245273

uncharacterized LOC7479057

uncharacterized LOC7471864

uncharacterized LOC11440498

uncharacterized LOC11432489

uncharacterized LOC101256651

uncharacterized LOC101248992

uncharacterized LOC102581959

uncharacterized LOC102605289

uncharacterized LOC107787015

uncharacterized LOC107817516

uncharacterized LOC107767834

uncharacterized LOC4339217

uncharacterized LOC4344849

uncharacterized LOC107276041

uncharacterized LOC109941669

myosin heavy chain-related

uncharacterized LOC103652451

uncharacterized LOC123138370

myosin-3

myosin-3-like

uncharacterized LOC123443590

synaptonemal complex protein 1-like

uncharacterized LOC8082388

CAP-Gly domain-containing linker protein 1

uncharacterized LOC8080063

uncharacterized LOC100844760

CAP-Gly domain-containing linker protein 1

cingulin

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03460	Fanconi anemia pathway	2
bra03030	DNA replication	2
bra03410	Base excision repair	2
bra03420	Nucleotide excision repair	2
bra03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04814	Motor proteins	3
ghi04148	Efferocytosis	2
ghi04517	IgSF CAM signaling	2
ghi04620	Toll-like receptor signaling pathway	2
ghi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03020	RNA polymerase	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00230	Purine metabolism	2
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2
nta04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00310	Lysine degradation	2
zma04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04814	Motor proteins	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00514	Other types of O-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01230	Biosynthesis of amino acids	5
hvu00940	Phenylpropanoid biosynthesis	3
hvu00480	Glutathione metabolism	2
hvu00010	Glycolysis / Gluconeogenesis	2
hvu00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04145	Phagosome	2
sbi04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04814	Motor proteins	3

Expression

Expression pattern

Entrez Gene ID^*

821579

841488

103869331

103871328

125588699

111207026

106357499

107939858

121212489

107903325

102620352

102607593

100795752

100801304

100799140

100255542

100245273

7479057

7471864

11440498

11432489

101256651

101248992

102581959

102605289

107787015

107817516

107767834

4339217

4344849

107276041

109941669

101027241

103652451

123138370

123046785

123054644

123427902

123443590

123410663

8082388

8071136

8080063

100844760

100825880

100822340

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	3	2	3	2	2	2	2	2	3	3	2	3	3	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G20350 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G20350 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**