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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT3G26480   Transducin family protein / WD-40 repeat family protein 
 ath-m.4.bio   AT3G26480   Transducin family protein / WD-40 repeat family protein 
 ath-m.4.hor   AT3G26480   Transducin family protein / WD-40 repeat family protein 
 ath-m.4.lig   AT3G26480   Transducin family protein / WD-40 repeat family protein 
 ath-m.4.str   AT3G26480   Transducin family protein / WD-40 repeat family protein 
 ath-m.4.tis   AT3G26480   Transducin family protein / WD-40 repeat family protein 
 ath-u.5   AT2G18900   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100807740   WD repeat-containing protein 75 
 gma-u.5   100777699   WD repeat-containing protein 75 
 vvi-u.5   100258308   uncharacterized LOC100258308 
 ppo-u.5   18100484   uncharacterized LOC18100484 
 ppo-u.5   7488959   uncharacterized LOC7488959 
 mtr-u.5   11438240   WD repeat-containing protein 75 
 sly-u.5   101258878   uncharacterized LOC101258878 
 osa-u.5   4352760   uncharacterized LOC4352760 
 zma-u.5   100383022   Transducin/WD40 repeat-like superfamily protein 

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Top 50 coexpressed genes to AT3G26480 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G26480 (ath-m.9 coexpression data)

CoexMap"822253"


athAT3G26480 | Entrez gene ID : 822253      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 7 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001326137.1 [sequence] [blastp]
NP_189279.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 3,  cyto 1,  extr 1,  E.R. 1,  cyto_E.R. 1  (predict for NP_001326137.1)
mito 4,  chlo 2,  nucl 2,  cyto 1,  vacu 1,  pero 1,  cyto_pero 1  (predict for NP_189279.1)
Subcellular
localization
TargetP
mito 4,  other 3  (predict for NP_001326137.1)
mito 4,  other 3  (predict for NP_189279.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT3G26480

.
ath-m.4.bio
for
AT3G26480

.
ath-m.4.hor
for
AT3G26480

.
ath-m.4.lig
for
AT3G26480

.
ath-m.4.str
for
AT3G26480

.
ath-m.4.tis
for
AT3G26480

.
ath-u.5
for
AT2G18900

.
gma-u.5
for
100807740

.
gma-u.5
for
100777699

.
vvi-u.5
for
100258308

.
ppo-u.5
for
18100484

.
ppo-u.5
for
7488959

.
mtr-u.5
for
11438240

.
sly-u.5
for
101258878

.
osa-u.5
for
4352760

.
zma-u.5
for
100383022

.


Ortholog ID: 7508
Species ath gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT2G18900 LOC100807740 LOC101258878 LOC4352760 LOC100383022 LOC103828358 LOC100258308 LOC18100484 LOC7488959 LOC11438240 LOC123110417 LOC123102240 LOC123452779 LOC107958675 LOC107907492 LOC125605205 LOC106357636 CHLRE_04g215350v5 LOC8070134 LOC102583187 LOC102613363 LOC100846037 LOC107806280 LOC107762516
Function* Transducin/WD40 repeat-like superfamily protein WD repeat-containing protein 75 uncharacterized LOC101258878 uncharacterized LOC4352760 Transducin/WD40 repeat-like superfamily protein WD repeat-containing protein 75 uncharacterized LOC100258308 uncharacterized LOC18100484 uncharacterized LOC7488959 WD repeat-containing protein 75 WD repeat-containing protein 75 WD repeat-containing protein 75 WD repeat-containing protein 75 WD repeat-containing protein 75 WD repeat-containing protein 75 WD repeat-containing protein 75-like WD repeat-containing protein 75 uncharacterized protein WD repeat-containing protein 75 WD repeat-containing protein 75 uncharacterized LOC102613363 WD repeat-containing protein 75 uncharacterized LOC107806280 uncharacterized LOC107762516
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03013 Nucleocytoplasmic transport 5
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
mtr03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 8
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi00290 Valine, leucine and isoleucine biosynthesis 2
ghi00770 Pantothenate and CoA biosynthesis 2
ghi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 7
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 7
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 8
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816406 100807740 101258878 4352760 100383022 103828358 100258308 18100484 7488959 11438240 123110417 123102240 123452779 107958675 107907492 125605205 106357636 5724265 8070134 102583187 102613363 100846037 107806280 107762516
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