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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT3G28490   Oxoglutarate/iron-dependent oxygenase 
 ath-m.4.bio   AT3G28490   Oxoglutarate/iron-dependent oxygenase 
 ath-m.4.hor   AT3G28490   Oxoglutarate/iron-dependent oxygenase 
 ath-m.4.lig   AT3G28490   Oxoglutarate/iron-dependent oxygenase 
 ath-m.4.str   AT3G28490   Oxoglutarate/iron-dependent oxygenase 
 ath-m.4.tis   AT3G28490   Oxoglutarate/iron-dependent oxygenase 
 ath-u.5   AT3G28480   Oxoglutarate/iron-dependent oxygenase 
 gma-u.5   100805097   probable prolyl 4-hydroxylase 7 
 gma-u.5   100819289   probable prolyl 4-hydroxylase 7 
 vvi-u.5   100242241   probable prolyl 4-hydroxylase 6 
 ppo-u.5   7495938   probable prolyl 4-hydroxylase 7 
 mtr-u.5   11434433   probable prolyl 4-hydroxylase 7 
 sly-u.5   101262682   probable prolyl 4-hydroxylase 6 
 osa-u.5   107280232   probable prolyl 4-hydroxylase 4 
 osa-u.5   4348615   probable prolyl 4-hydroxylase 7 
 osa-u.5   4342642   probable prolyl 4-hydroxylase 6 
 zma-u.5   100383727   prolyl 4-hydroxylase 2 
 zma-u.5   100193935   uncharacterized LOC100193935 
 zma-u.5   100274058   putative prolyl 4-hydroxylase 12 

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Top 50 coexpressed genes to AT3G28490 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G28490 (ath-m.9 coexpression data)

CoexMap"822479"


athAT3G28490 | Entrez gene ID : 822479      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 7 2 1 1 1 1 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00330 [list] [network] Arginine and proline metabolism (54 genes)
GO BP
GO CC
GO:0005576 [list] [network] extracellular region  (3158 genes)  ISM  
GO MF
Protein NP_189490.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1  (predict for NP_189490.2)
Subcellular
localization
TargetP
scret 9  (predict for NP_189490.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT3G28490
ath-m.4.bio
for
AT3G28490
ath-m.4.hor
for
AT3G28490
ath-m.4.lig
for
AT3G28490
ath-m.4.str
for
AT3G28490
ath-m.4.tis
for
AT3G28490
ath-u.5
for
AT3G28480
gma-u.5
for
100805097
gma-u.5
for
100819289
vvi-u.5
for
100242241
ppo-u.5
for
7495938
mtr-u.5
for
11434433
sly-u.5
for
101262682
osa-u.5
for
107280232
osa-u.5
for
4348615
osa-u.5
for
4342642
zma-u.5
for
100383727
zma-u.5
for
100193935
zma-u.5
for
100274058


Ortholog ID: 3810
Species ath bra bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre cre
Symbol AT3G28480 LOC103875148 LOC103837019 LOC106397251 LOC106411593 LOC107939077 LOC107924304 LOC102612484 LOC100819289 LOC100805097 LOC100242241 LOC7495938 LOC11434433 LOC101262682 LOC102581670 LOC107769382 LOC107776929 LOC107280232 LOC4342642 LOC100274058 LOC100193935 LOC123180842 LOC123113799 LOC123428378 LOC123452821 LOC8075083 LOC8064925 LOC100831521 LOC100834813 CHLRE_03g160200v5 CHLRE_08g369300v5
Function* Oxoglutarate/iron-dependent oxygenase probable prolyl 4-hydroxylase 7 probable prolyl 4-hydroxylase 7 probable prolyl 4-hydroxylase 7 probable prolyl 4-hydroxylase 7 probable prolyl 4-hydroxylase 7 probable prolyl 4-hydroxylase 7 probable prolyl 4-hydroxylase 6 probable prolyl 4-hydroxylase 7 probable prolyl 4-hydroxylase 7 probable prolyl 4-hydroxylase 6 probable prolyl 4-hydroxylase 7 probable prolyl 4-hydroxylase 7 probable prolyl 4-hydroxylase 6 probable prolyl 4-hydroxylase 6 putative prolyl 4-hydroxylase 6 probable prolyl 4-hydroxylase 6 probable prolyl 4-hydroxylase 4 probable prolyl 4-hydroxylase 6 putative prolyl 4-hydroxylase 12 uncharacterized LOC100193935 probable prolyl 4-hydroxylase 7 probable prolyl 4-hydroxylase 7 probable prolyl 4-hydroxylase 7 probable prolyl 4-hydroxylase 7 probable prolyl 4-hydroxylase 6 probable prolyl 4-hydroxylase 7 probable prolyl 4-hydroxylase 6 probable prolyl 4-hydroxylase 7 uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04626 Plant-pathogen interaction 3
ath04016 MAPK signaling pathway - plant 2
ath00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 4
bra03060 Protein export 3
bra04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03060 Protein export 3
bra00190 Oxidative phosphorylation 2
bra04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00330 Arginine and proline metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00330 Arginine and proline metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00330 Arginine and proline metabolism 6
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 8
cit01230 Biosynthesis of amino acids 8
cit00010 Glycolysis / Gluconeogenesis 7
cit00710 Carbon fixation by Calvin cycle 5
cit00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00010 Glycolysis / Gluconeogenesis 5
gma01230 Biosynthesis of amino acids 5
gma01200 Carbon metabolism 4
gma00330 Arginine and proline metabolism 3
gma00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 6
gma00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 4
vvi00010 Glycolysis / Gluconeogenesis 3
vvi00710 Carbon fixation by Calvin cycle 3
vvi01230 Biosynthesis of amino acids 3
vvi00330 Arginine and proline metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 4
ppo01230 Biosynthesis of amino acids 4
ppo00010 Glycolysis / Gluconeogenesis 4
ppo00330 Arginine and proline metabolism 3
ppo00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00220 Arginine biosynthesis 2
mtr00250 Alanine, aspartate and glutamate metabolism 2
mtr00710 Carbon fixation by Calvin cycle 2
mtr01200 Carbon metabolism 2
mtr01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 2
nta00053 Ascorbate and aldarate metabolism 2
nta00480 Glutathione metabolism 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 2
nta00330 Arginine and proline metabolism 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00330 Arginine and proline metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04146 Peroxisome 3
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 3
tae00190 Oxidative phosphorylation 3
tae00330 Arginine and proline metabolism 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00330 Arginine and proline metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00010 Glycolysis / Gluconeogenesis 5
sbi00330 Arginine and proline metabolism 2
sbi00030 Pentose phosphate pathway 2
sbi00051 Fructose and mannose metabolism 2
sbi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 5
sbi04130 SNARE interactions in vesicular transport 2
sbi03083 Polycomb repressive complex 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00010 Glycolysis / Gluconeogenesis 2
bdi00330 Arginine and proline metabolism 2
bdi00940 Phenylpropanoid biosynthesis 2
bdi00941 Flavonoid biosynthesis 2
bdi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 2
bdi04120 Ubiquitin mediated proteolysis 2
bdi04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00330 Arginine and proline metabolism 4
cre04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822478 103875148 103837019 106397251 106411593 107939077 107924304 102612484 100819289 100805097 100242241 7495938 11434433 101262682 102581670 107769382 107776929 107280232 4342642 100274058 100193935 123180842 123113799 123428378 123452821 8075083 8064925 100831521 100834813 5722993 5721719
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