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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G28810   mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) 
 ath-r.7   AT3G28810   mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) 
 ath-e.2   AT3G28810   mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) 
 ath-u.5   AT3G28820   mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) 
 ath-u.5   AT3G28980   mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) 
 bra-r.6   103840398   cell wall protein DAN4 
 bna-r.1   106360002   uncharacterized LOC106360002 
 bna-r.1   106364644   cell wall protein RBR3-like 
 bna-r.1   106409653   cell wall protein DAN4-like 

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Top 50 coexpressed genes to AT3G28810 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G28810 (ath-u.5 coexpression data)

CoexMap"822513"


athAT3G28810 | Entrez gene ID : 822513      
Species ath bra bna cre vvi ppo mtr hvu tae osa gma zma sly ghi cit sbi nta bdi sot
Paralog 5 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
Protein NP_001326631.1 [sequence] [blastp]
NP_189523.1 [sequence] [blastp]
Subcellular
localization
wolf
vacu 5,  golg 3,  extr 1  (predict for NP_001326631.1)
vacu 5,  golg 3,  nucl 1,  plas 1,  extr 1,  nucl_plas 1  (predict for NP_189523.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_001326631.1)
scret 9  (predict for NP_189523.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G28810
ath-r.7
for
AT3G28810
ath-e.2
for
AT3G28810
ath-u.5
for
AT3G28820
ath-u.5
for
AT3G28980
bra-r.6
for
103840398
bna-r.1
for
106360002
bna-r.1
for
106364644
bna-r.1
for
106409653


Ortholog ID: 15831
Species ath ath ath bra bna bna bna
Symbol AT3G28810 AT3G28820 AT3G28980 LOC103840398 LOC106360002 LOC106409653 LOC106444214
Function* mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) cell wall protein DAN4 uncharacterized LOC106360002 cell wall protein DAN4-like cell wall protein DAN4-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00040 Pentose and glucuronate interconversions 4
ath00053 Ascorbate and aldarate metabolism 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822513 822514 822538 103840398 106360002 106409653 106444214
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