Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G28980   mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) 
 ath-r.7   AT3G28980   mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) 
 ath-m.9   AT3G28980   mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) 
 ath-e.2   AT3G28980   mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) 
 ath-m.4.bio   AT3G28980   mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) 
 ath-m.4.hor   AT3G28980   mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) 
 ath-m.4.lig   AT3G28980   mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) 
 ath-m.4.str   AT3G28980   mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) 
 ath-m.4.tis   AT3G28980   mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) 
 ath-u.5   AT3G28810   mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) 
 ath-u.5   AT3G28820   mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) 
 bra-r.6   103840398   cell wall protein DAN4 
 bna-r.1   106360002   uncharacterized LOC106360002 
 bna-r.1   106364644   cell wall protein RBR3-like 
 bna-r.1   106409653   cell wall protein DAN4-like 

close


Top 50 coexpressed genes to AT3G28980 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to AT3G28980 (ath-u.5 coexpression data)

CoexMap"822538"


athAT3G28980 | Entrez gene ID : 822538    
Species ath bra bna cre vvi ppo mtr hvu tae osa gma zma sly ghi cit sbi nta bdi sot
Paralog 11 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005576 [list] [network] extracellular region  (3158 genes)  ISM  
GO MF
Protein NP_001326976.1 [sequence] [blastp]
NP_001326977.1 [sequence] [blastp]
NP_001326978.1 [sequence] [blastp]
NP_001326979.1 [sequence] [blastp]
NP_189540.2 [sequence] [blastp]
Subcellular
localization
wolf
vacu 5,  golg 3,  E.R._vacu 3  (predict for NP_001326976.1)
vacu 5,  golg 3,  nucl 1,  golg_plas 1  (predict for NP_001326977.1)
vacu 5,  golg 3,  E.R._vacu 3  (predict for NP_001326978.1)
vacu 5,  golg 3,  E.R._vacu 3  (predict for NP_001326979.1)
vacu 5,  golg 3,  nucl 1,  golg_plas 1  (predict for NP_189540.2)
Subcellular
localization
TargetP
scret 9  (predict for NP_001326976.1)
scret 9  (predict for NP_001326977.1)
scret 9  (predict for NP_001326978.1)
scret 9  (predict for NP_001326979.1)
scret 9  (predict for NP_189540.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G28980
ath-r.7
for
AT3G28980
ath-m.9
for
AT3G28980
ath-e.2
for
AT3G28980
ath-m.4.bio
for
AT3G28980
ath-m.4.hor
for
AT3G28980
ath-m.4.lig
for
AT3G28980
ath-m.4.str
for
AT3G28980
ath-m.4.tis
for
AT3G28980
ath-u.5
for
AT3G28810
ath-u.5
for
AT3G28820
bra-r.6
for
103840398
bna-r.1
for
106360002
bna-r.1
for
106364644
bna-r.1
for
106409653


Ortholog ID: 15831
Species ath ath ath bra bna bna bna
Symbol AT3G28980 AT3G28810 AT3G28820 LOC103840398 LOC106360002 LOC106409653 LOC106444214
Function* mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) cell wall protein DAN4 uncharacterized LOC106360002 cell wall protein DAN4-like cell wall protein DAN4-like
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00040 Pentose and glucuronate interconversions 4
ath00053 Ascorbate and aldarate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00040 Pentose and glucuronate interconversions 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822538 822513 822514 103840398 106360002 106409653 106444214
The preparation time of this page was 0.2 [sec].