ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	AT3G44220	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
ath-r.7	AT3G44220	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
ath-e.2	AT3G44220	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
ath-u.5	NHL12	NDR1/HIN1-like 12
ath-u.5	AT5G06330	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
gma-u.5	100788592	NDR1/HIN1-like protein 1
gma-u.5	100795832	NDR1/HIN1-like protein 1
gma-u.5	100812905	NDR1/HIN1-like protein 1
vvi-u.5	100252904	uncharacterized LOC100252904
ppo-u.5	18100613	NDR1/HIN1-like protein 1
ppo-u.5	7489313	NDR1/HIN1-like protein 1
ppo-u.5	7488100	NDR1/HIN1-like protein 1
mtr-u.5	25499471	NDR1/HIN1-like protein 1
mtr-u.5	11444695	NDR1/HIN1-like protein 1
mtr-u.5	11406595	NDR1/HIN1-like protein 1
sly-u.5	101249693	NDR1/HIN1-like protein 1
sly-u.5	101245724	NDR1/HIN1-like protein 1
sly-u.5	101262036	NDR1/HIN1-like protein 1
osa-u.5	4349828	NDR1/HIN1-like protein 1
osa-u.5	4329582	NDR1/HIN1-like protein 1
osa-u.5	4351561	NDR1/HIN1-like protein 1
zma-u.5	100193113	uncharacterized LOC100193113
zma-u.5	100284961	VAMP protein SEC22
zma-u.5	100282844	uncharacterized LOC100282844

Annotation

functional annotation

KEGG

GO BP

GO:0098542 [list] [network] defense response to other organism

(274 genes)

IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(14000 genes)

ISM

GO MF

Protein

NP_190008.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, E.R. 3, cyto 1, chlo_mito 1, nucl 1, plas 1, extr 1, vacu 1, nucl_plas 1, cyto_pero 1

(predict for NP_190008.1)

Subcellular
localization
TargetP

other 9, mito 3

(predict for NP_190008.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT3G44220	ath-r.7 for AT3G44220	ath-e.2 for AT3G44220	ath-u.5 for NHL12	ath-u.5 for AT5G06330	gma-u.5 for 100788592	gma-u.5 for 100795832	gma-u.5 for 100812905	vvi-u.5 for 100252904	ppo-u.5 for 18100613	ppo-u.5 for 7489313	ppo-u.5 for 7488100	mtr-u.5 for 25499471	mtr-u.5 for 11444695	mtr-u.5 for 11406595	sly-u.5 for 101249693	sly-u.5 for 101245724	sly-u.5 for 101262036	osa-u.5 for 4349828	osa-u.5 for 4329582	osa-u.5 for 4351561	zma-u.5 for 100193113	zma-u.5 for 100284961	zma-u.5 for 100282844

Ortholog

Ortholog ID: 664

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family

NDR1/HIN1-like protein 12

NDR1/HIN1-like protein 1

hypothetical protein

NDR1/HIN1-like protein 1

uncharacterized LOC100252904

NDR1/HIN1-like protein 1

protein YLS9-like

NDR1/HIN1-like protein 1

VAMP protein SEC22

NDR1/HIN1-like protein 1

NDR1/HIN1-like protein 12

NDR1/HIN1-like protein 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	4
bra04070	Phosphatidylinositol signaling system	3
bra04016	MAPK signaling pathway - plant	2
bra04075	Plant hormone signal transduction	2
bra04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01240	Biosynthesis of cofactors	3
bra01230	Biosynthesis of amino acids	2
bra00010	Glycolysis / Gluconeogenesis	2
bra00620	Pyruvate metabolism	2
bra00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00240	Pyrimidine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01230	Biosynthesis of amino acids	4
mtr00940	Phenylpropanoid biosynthesis	3
mtr00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
mtr00030	Pentose phosphate pathway	2
mtr00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae02010	ABC transporters	3
tae04981	Folate transport and metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00941	Flavonoid biosynthesis	2
hvu04712	Circadian rhythm - plant	2
hvu00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00940	Phenylpropanoid biosynthesis	4
bdi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
bdi00941	Flavonoid biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

830521

103860766

103870322

106452492

107899420

107889437

102607257

102622165

100819285

100812905

100252904

7489313

7488100

11406595

25499471

101245724

101249693

102584448

102606257

107780116

107801714

4351561

4329582

100284961

100273203

123102976

123126017

123411717

123453086

8061025

8058577

100844317

100838740

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT3G44220 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G44220 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	5	3	1	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G44220 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G44220 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**