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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G49640   Aldolase-type TIM barrel family protein 
 ath-r.7   AT3G49640   Aldolase-type TIM barrel family protein 
 ath-m.9   AT3G49640   Aldolase-type TIM barrel family protein 
 ath-e.2   AT3G49640   Aldolase-type TIM barrel family protein 
 ath-m.4.bio   AT3G49640   Aldolase-type TIM barrel family protein 
 ath-m.4.hor   AT3G49640   Aldolase-type TIM barrel family protein 
 ath-m.4.lig   AT3G49640   Aldolase-type TIM barrel family protein 
 ath-m.4.str   AT3G49640   Aldolase-type TIM barrel family protein 
 ath-m.4.tis   AT3G49640   Aldolase-type TIM barrel family protein 
 gma-u.5   100787829   tRNA-dihydrouridine(20) synthase [NAD(P)+]-like 
 gma-u.5   100791745   tRNA-dihydrouridine(20) synthase [NAD(P)+]-like 
 vvi-u.5   100853975   uncharacterized LOC100853975 
 mtr-u.5   11444796   tRNA-dihydrouridine(20) synthase [NAD(P)+]-like 
 sly-u.5   101254211   uncharacterized LOC101254211 
 osa-u.5   4336488   uncharacterized LOC4336488 
 zma-u.5   100193915   uncharacterized LOC100193915 

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Top 50 coexpressed genes to AT3G49640 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G49640 (ath-u.5 coexpression data)

CoexMap"824126"


athAT3G49640 | Entrez gene ID : 824126      
Species ath gma vvi mtr sly osa zma bdi hvu bra cit bna ppo sbi ghi sot nta cre tae
Paralog 9 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0008033 [list] [network] tRNA processing  (58 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0017150 [list] [network] tRNA dihydrouridine synthase activity  (3 genes)  IEA  
GO:0050660 [list] [network] flavin adenine dinucleotide binding  (71 genes)  IEA  
Protein NP_001118800.1 [sequence] [blastp]
NP_001325796.1 [sequence] [blastp]
NP_001325797.1 [sequence] [blastp]
NP_001325798.1 [sequence] [blastp]
NP_190533.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 4  (predict for NP_001118800.1)
cyto 6,  chlo 2,  pero 1  (predict for NP_001325796.1)
chlo 6,  mito 3,  nucl 1,  extr 1  (predict for NP_001325797.1)
cyto 8,  chlo 1  (predict for NP_001325798.1)
cyto 7,  chlo 2  (predict for NP_190533.3)
Subcellular
localization
TargetP
other 6  (predict for NP_001118800.1)
scret 6  (predict for NP_001325796.1)
other 6  (predict for NP_001325797.1)
scret 6  (predict for NP_001325798.1)
scret 6  (predict for NP_190533.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G49640
ath-r.7
for
AT3G49640
ath-m.9
for
AT3G49640
ath-e.2
for
AT3G49640
ath-m.4.bio
for
AT3G49640
ath-m.4.hor
for
AT3G49640
ath-m.4.lig
for
AT3G49640
ath-m.4.str
for
AT3G49640
ath-m.4.tis
for
AT3G49640
gma-u.5
for
100787829
gma-u.5
for
100791745
vvi-u.5
for
100853975
mtr-u.5
for
11444796
sly-u.5
for
101254211
osa-u.5
for
4336488
zma-u.5
for
100193915


Ortholog ID: 10816
Species ath bra bna bna ghi ghi cit gma gma vvi mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol AT3G49640 LOC103873037 LOC106347408 LOC106418663 LOC121215303 LOC107950501 LOC102628574 LOC100787829 LOC100791745 LOC100853975 LOC11444796 LOC101254211 LOC102599476 LOC107768396 LOC107798641 LOC4336488 LOC100193915 LOC123189803 LOC123053909 LOC123427334 LOC8056045 LOC100837531 CHLRE_13g592300v5
Function* Aldolase-type TIM barrel family protein tRNA-dihydrouridine(20) synthase [NAD(P)+]-like tRNA-dihydrouridine(20) synthase [NAD(P)+]-like tRNA-dihydrouridine(20) synthase [NAD(P)+]-like tRNA-dihydrouridine(20) synthase [NAD(P)+]-like tRNA-dihydrouridine(20) synthase [NAD(P)+]-like uncharacterized LOC102628574 tRNA-dihydrouridine(20) synthase [NAD(P)+]-like tRNA-dihydrouridine(20) synthase [NAD(P)+]-like uncharacterized LOC100853975 tRNA-dihydrouridine(20) synthase [NAD(P)+]-like uncharacterized LOC101254211 tRNA-dihydrouridine(20) synthase [NAD(P)+]-like uncharacterized LOC107768396 uncharacterized LOC107798641 uncharacterized LOC4336488 uncharacterized LOC100193915 tRNA-dihydrouridine(20) synthase [NAD(P)+]-like tRNA-dihydrouridine(20) synthase [NAD(P)+]-like tRNA-dihydrouridine(20) synthase [NAD(P)+]-like tRNA-dihydrouridine(20) synthase [NAD(P)+]-like tRNA-dihydrouridine(20) synthase [NAD(P)+]-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00790 Folate biosynthesis 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 2
ghi00470 D-Amino acid metabolism 2
ghi00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 2
ghi00470 D-Amino acid metabolism 2
ghi00220 Arginine biosynthesis 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
cit03015 mRNA surveillance pathway 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00561 Glycerolipid metabolism 2
gma00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00790 Folate biosynthesis 2
mtr01240 Biosynthesis of cofactors 2
mtr04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03010 Ribosome 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00564 Glycerophospholipid metabolism 3
tae00565 Ether lipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00564 Glycerophospholipid metabolism 3
tae00565 Ether lipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
cre03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824126 103873037 106347408 106418663 121215303 107950501 102628574 100787829 100791745 100853975 11444796 101254211 102599476 107768396 107798641 4336488 100193915 123189803 123053909 123427334 8056045 100837531 5718663
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