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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G54120   Reticulon family protein 
 ath-r.7   AT3G54120   Reticulon family protein 
 ath-m.9   AT3G54120   Reticulon family protein 
 ath-e.2   AT3G54120   Reticulon family protein 
 ath-m.4.bio   AT3G54120   Reticulon family protein 
 ath-m.4.hor   AT3G54120   Reticulon family protein 
 ath-m.4.lig   AT3G54120   Reticulon family protein 
 ath-m.4.str   AT3G54120   Reticulon family protein 
 ath-m.4.tis   AT3G54120   Reticulon family protein 
 gma-u.5   100809125   reticulon-like protein B12 
 gma-u.5   100775554   reticulon-like protein B12 
 vvi-u.5   100266674   reticulon-like protein B12 
 ppo-u.5   7466040   reticulon-like protein B12 
 mtr-u.5   11417883   reticulon-like protein B12 
 sly-u.5   101255422   reticulon-like protein B12 
 osa-u.5   4335583   reticulon-like protein B12 
 zma-u.5   103651007   reticulon-like protein B12 
 zma-u.5   100284399   uncharacterized LOC100284399 

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Top 50 coexpressed genes to AT3G54120 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G54120 (ath-u.5 coexpression data)

CoexMap"824579"


athAT3G54120 | Entrez gene ID : 824579      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 9 2 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
Protein NP_190980.1 [sequence] [blastp]
Subcellular
localization
wolf
vacu 8,  extr 1  (predict for NP_190980.1)
Subcellular
localization
TargetP
other 9  (predict for NP_190980.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G54120

.
ath-r.7
for
AT3G54120

.
ath-m.9
for
AT3G54120

.
ath-e.2
for
AT3G54120

.
ath-m.4.bio
for
AT3G54120

.
ath-m.4.hor
for
AT3G54120

.
ath-m.4.lig
for
AT3G54120

.
ath-m.4.str
for
AT3G54120

.
ath-m.4.tis
for
AT3G54120

.
gma-u.5
for
100809125

.
gma-u.5
for
100775554

.
vvi-u.5
for
100266674

.
ppo-u.5
for
7466040

.
mtr-u.5
for
11417883

.
sly-u.5
for
101255422

.
osa-u.5
for
4335583

.
zma-u.5
for
103651007

.
zma-u.5
for
100284399

.


Ortholog ID: 10149
Species ath gma gma sly osa zma zma bra vvi ppo mtr ghi ghi bna bna sbi sbi sot cit nta nta
Symbol AT3G54120 LOC100775554 LOC100809125 LOC101255422 LOC4335583 LOC103651007 LOC100284399 LOC103829965 LOC100266674 LOC7466040 LOC11417883 LOC107948864 LOC107899033 LOC106353680 LOC125589278 LOC8066573 LOC8058915 LOC102582482 LOC102607847 LOC107801266 LOC107805153
Function* Reticulon family protein reticulon-like protein B12 reticulon-like protein B12 reticulon-like protein B12 reticulon-like protein B12 reticulon-like protein B12 uncharacterized LOC100284399 reticulon-like protein B12 reticulon-like protein B12 reticulon-like protein B12 reticulon-like protein B12 reticulon-like protein B12 reticulon-like protein B12 reticulon-like protein B12 reticulon-like protein B12 reticulon-like protein B12 reticulon-like protein B12 reticulon-like protein B12 reticulon-like protein B12 reticulon-like protein B12 reticulon-like protein B12
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 4
gma00270 Cysteine and methionine metabolism 2
gma00670 One carbon pool by folate 2
gma00999 Biosynthesis of various plant secondary metabolites 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 2
gma00040 Pentose and glucuronate interconversions 2
gma00541 Biosynthesis of various nucleotide sugars 2
gma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 3
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 4
zma04142 Lysosome 3
zma00190 Oxidative phosphorylation 2
zma04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00260 Glycine, serine and threonine metabolism 2
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00670 One carbon pool by folate 2
vvi01200 Carbon metabolism 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04145 Phagosome 3
ppo04517 IgSF CAM signaling 3
ppo04814 Motor proteins 3
ppo00260 Glycine, serine and threonine metabolism 3
ppo01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 10
ghi04145 Phagosome 9
ghi04141 Protein processing in endoplasmic reticulum 4
ghi03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 10
ghi04145 Phagosome 9
ghi04141 Protein processing in endoplasmic reticulum 4
ghi03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00240 Pyrimidine metabolism 2
bna01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00240 Pyrimidine metabolism 2
bna01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04814 Motor proteins 6
sbi04145 Phagosome 4
sbi04517 IgSF CAM signaling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 8
sbi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00510 N-Glycan biosynthesis 5
sot04141 Protein processing in endoplasmic reticulum 5
sot00190 Oxidative phosphorylation 5
sot04142 Lysosome 5
sot04145 Phagosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
cit04141 Protein processing in endoplasmic reticulum 3
cit03083 Polycomb repressive complex 2
cit04120 Ubiquitin mediated proteolysis 2
cit04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 4
nta00940 Phenylpropanoid biosynthesis 4
nta00270 Cysteine and methionine metabolism 4
nta00450 Selenocompound metabolism 4
nta01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 4
nta00940 Phenylpropanoid biosynthesis 4
nta00270 Cysteine and methionine metabolism 4
nta00450 Selenocompound metabolism 4
nta01230 Biosynthesis of amino acids 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824579 100775554 100809125 101255422 4335583 103651007 100284399 103829965 100266674 7466040 11417883 107948864 107899033 106353680 125589278 8066573 8058915 102582482 102607847 107801266 107805153
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