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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5  AT3G60040  F-box family protein 
 ath-r.7  AT3G60040  F-box family protein 
 ath-e.2  AT3G60040  F-box family protein 
 vvi-u.5  104877721  F-box/LRR-repeat protein At3g59190 
 mtr-u.5  25492930  F-box/FBD/LRR-repeat protein At5g53840 
 sly-u.5  101247567  F-box/FBD/LRR-repeat protein At3g26920-like 
 sly-u.5  101252019  FBD-associated F-box protein At2g26860 
 sly-u.5  101255714  F-box/LRR-repeat protein At4g14103 

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Top 50 coexpressed genes to AT3G60040 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G60040 (ath-u.5 coexpression data)

CoexMap"825174"


athAT3G60040 | Entrez gene ID : 825174
Species ath vvi mtr sly ppo hvu osa sot tae nta bra cit gma zma ghi bdi bna sbi cre
Paralog 3 1 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
GO:0004523 [list] [network] RNA-DNA hybrid ribonuclease activity  (45 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (3104 genes)  IEA  
Protein NP_001325683.1 [sequence] [blastp]
NP_001325684.1 [sequence] [blastp]
NP_001325685.1 [sequence] [blastp]
NP_001325686.1 [sequence] [blastp]
NP_191563.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 3,  nucl 2,  cyto_pero 2,  cyto_plas 2  (predict for NP_001325683.1)
plas 3,  chlo 2,  nucl 1,  cyto_nucl 1,  cysk_plas 1,  mito_plas 1  (predict for NP_001325684.1)
nucl 2,  cyto_nucl 2,  plas 2,  cyto 1,  E.R. 1,  chlo 1,  E.R._vacu 1  (predict for NP_001325685.1)
cyto 3,  nucl 2,  cyto_pero 2,  cyto_plas 2  (predict for NP_001325686.1)
plas 3,  chlo 2,  nucl 1,  cyto_nucl 1,  cysk_plas 1,  mito_plas 1  (predict for NP_191563.1)
Subcellular
localization
TargetP
other 6,  mito 3  (predict for NP_001325683.1)
other 6,  mito 3  (predict for NP_001325684.1)
other 8  (predict for NP_001325685.1)
other 6,  mito 3  (predict for NP_001325686.1)
other 6,  mito 3  (predict for NP_191563.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G60040

.

ath-r.7
for
AT3G60040

.

ath-e.2
for
AT3G60040

.

vvi-u.5
for
104877721

.

mtr-u.5
for
25492930

.

sly-u.5
for
101247567

.

sly-u.5
for
101252019

.

sly-u.5
for
101255714

.


Ortholog ID: 145
Species ath sly sly bra vvi bna bna sot cit cit
Symbol AT3G59200 LOC101255714 LOC101247567 LOC103857415 LOC104877721 LOC106387974 LOC106353159 LOC102587149 LOC102618124 LOC102618892
Function* F-box/RNI-like superfamily protein F-box/LRR-repeat protein At4g14103 F-box/FBD/LRR-repeat protein At3g26920-like F-box/LRR-repeat protein At3g58930-like F-box/LRR-repeat protein At3g59190 F-box/LRR-repeat protein At3g58930-like F-box/LRR-repeat protein At3g59190 F-box/FBD/LRR-repeat protein At3g52680-like F-box/FBD/LRR-repeat protein At5g53840-like putative FBD-associated F-box protein At5g56440
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 4
bna03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825089 101255714 101247567 103857415 104877721 106387974 106353159 102587149 102618124 102618892
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