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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G61950   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-r.7   AT3G61950   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.9   AT3G61950   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-e.2   AT3G61950   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.bio   AT3G61950   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.hor   AT3G61950   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.lig   AT3G61950   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.str   AT3G61950   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.tis   AT3G61950   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   AT2G46810   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 gma-u.5   100789928   transcription factor bHLH57 
 gma-u.5   100783582   transcription factor bHLH57 
 vvi-u.5   100248794   transcription factor bHLH67 
 ppo-u.5   7478805   transcription factor bHLH70 
 mtr-u.5   25500607   transcription factor bHLH67 

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Top 50 coexpressed genes to AT3G61950 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G61950 (ath-u.5 coexpression data)

CoexMap"825368"


athAT3G61950 | Entrez gene ID : 825368      
Species ath gma vvi ppo mtr tae osa hvu zma ghi bdi cit bra cre sbi bna sly nta sot
Paralog 10 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009631 [list] [network] cold acclimation  (60 genes)  IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  ISS TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0042803 [list] [network] protein homodimerization activity  (237 genes)  IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001325694.1 [sequence] [blastp]
NP_001325695.1 [sequence] [blastp]
NP_001325696.1 [sequence] [blastp]
NP_001325697.1 [sequence] [blastp]
NP_567121.1 [sequence] [blastp]
NP_850735.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto_nucl 5,  extr 1,  cysk 1  (predict for NP_001325694.1)
nucl 9,  cyto_nucl 5  (predict for NP_001325695.1)
nucl 7,  cyto 1,  pero 1,  cysk 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001325696.1)
nucl 9,  cyto_nucl 5  (predict for NP_001325697.1)
nucl 6,  cyto_nucl 4,  chlo 1,  cyto 1,  extr 1,  cysk 1,  mito_plas 1  (predict for NP_567121.1)
nucl 7,  cyto 1,  pero 1,  cysk 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_850735.1)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for NP_001325694.1)
other 7,  mito 3  (predict for NP_001325695.1)
other 8  (predict for NP_001325696.1)
other 7,  mito 3  (predict for NP_001325697.1)
other 7,  mito 3  (predict for NP_567121.1)
other 8  (predict for NP_850735.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G61950

.
ath-r.7
for
AT3G61950

.
ath-m.9
for
AT3G61950

.
ath-e.2
for
AT3G61950

.
ath-m.4.bio
for
AT3G61950

.
ath-m.4.hor
for
AT3G61950

.
ath-m.4.lig
for
AT3G61950

.
ath-m.4.str
for
AT3G61950

.
ath-m.4.tis
for
AT3G61950

.
ath-u.5
for
AT2G46810

.
gma-u.5
for
100789928

.
gma-u.5
for
100783582

.
vvi-u.5
for
100248794

.
ppo-u.5
for
7478805

.
mtr-u.5
for
25500607

.


Ortholog ID: 12649
Species ath ath gma gma bra bra vvi ppo mtr ghi ghi bna cit
Symbol AT3G61950 AT2G46810 LOC100789928 LOC100783582 LOC103848310 LOC103842020 LOC100248794 LOC7478805 LOC25500607 LOC107924746 LOC107922718 LOC111208874 LOC102626155
Function* basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor bHLH57 transcription factor bHLH57 transcription factor bHLH67 transcription factor bHLH67 transcription factor bHLH67 transcription factor bHLH70 transcription factor bHLH67 transcription factor bHLH67 transcription factor bHLH67 transcription factor bHLH67-like transcription factor bHLH57
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00562 Inositol phosphate metabolism 2
gma04070 Phosphatidylinositol signaling system 2
gma04144 Endocytosis 2
gma00053 Ascorbate and aldarate metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00941 Flavonoid biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825368 819294 100789928 100783582 103848310 103842020 100248794 7478805 25500607 107924746 107922718 111208874 102626155
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