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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   APG3   Peptide chain release factor 1 
 ath-r.7   APG3   Peptide chain release factor 1 
 ath-m.9   APG3   Peptide chain release factor 1 
 ath-e.2   APG3   Peptide chain release factor 1 
 ath-m.4.bio   APG3   Peptide chain release factor 1 
 ath-m.4.hor   APG3   Peptide chain release factor 1 
 ath-m.4.lig   APG3   Peptide chain release factor 1 
 ath-m.4.str   APG3   Peptide chain release factor 1 
 ath-m.4.tis   APG3   Peptide chain release factor 1 
 bra-r.6   103862767   peptide chain release factor APG3, chloroplastic 
 bra-r.6   103842096   peptide chain release factor APG3, chloroplastic 
 bna-r.1   106421383   peptide chain release factor APG3, chloroplastic 
 bna-r.1   106415278   peptide chain release factor APG3, chloroplastic 
 bna-r.1   106420483   peptide chain release factor APG3, chloroplastic-like 
 ghi-r.1   121203152   peptide chain release factor APG3, chloroplastic 
 ghi-r.1   107947962   peptide chain release factor APG3, chloroplastic 
 cit-r.1   102610080   peptide chain release factor APG3, chloroplastic 
 gma-u.5   100805037   peptide chain release factor APG3, chloroplastic 
 gma-u.5   100777225   peptide chain release factor APG3, chloroplastic 
 vvi-u.5   100247720   peptide chain release factor APG3, chloroplastic 
 ppo-u.5   7457960   peptide chain release factor APG3, chloroplastic 
 mtr-u.5   11430689   peptide chain release factor APG3, chloroplastic 
 sly-u.5   101256123   peptide chain release factor APG3, chloroplastic 
 sot-r.1   102578153   peptide chain release factor APG3, chloroplastic 
 nta-r.1   107819874   peptide chain release factor APG3, chloroplastic 
 nta-r.1   107822849   peptide chain release factor APG3, chloroplastic 
 osa-u.5   4351050   peptide chain release factor APG3, chloroplastic 
 zma-u.5   100279745   uncharacterized LOC100279745 
 tae-r.2   123176461   peptide chain release factor APG3, chloroplastic 
 tae-r.2   123096887   peptide chain release factor APG3, chloroplastic 
 tae-r.2   123086193   peptide chain release factor APG3, chloroplastic 
 hvu-r.1   123448398   peptide chain release factor APG3, chloroplastic 
 sbi-r.1   8070177   peptide chain release factor APG3, chloroplastic 
 bdi-r.1   100835769   peptide chain release factor APG3, chloroplastic 
 cre-r.1   CHLRE_16g673617v5   uncharacterized protein 

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Top 50 coexpressed genes to APG3 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to APG3 (ath-u.5 coexpression data)

CoexMap"825466"


athAPG3 | Entrez gene ID : 825466      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006415 [list] [network] translational termination  (11 genes)  IGI  
GO:0032544 [list] [network] plastid translation  (20 genes)  IGI  
GO:0010027 [list] [network] thylakoid membrane organization  (49 genes)  IMP  
GO:0009658 [list] [network] chloroplast organization  (197 genes)  IMP NAS  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  IGI  
GO MF
GO:0016149 [list] [network] translation release factor activity, codon specific  (4 genes)  IEA  
GO:0003747 [list] [network] translation release factor activity  (10 genes)  IGI  
Protein NP_191850.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for NP_191850.2)
Subcellular
localization
TargetP
chlo 9  (predict for NP_191850.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
APG3
ath-r.7
for
APG3
ath-m.9
for
APG3
ath-e.2
for
APG3
ath-m.4.bio
for
APG3
ath-m.4.hor
for
APG3
ath-m.4.lig
for
APG3
ath-m.4.str
for
APG3
ath-m.4.tis
for
APG3
bra-r.6
for
103862767
bra-r.6
for
103842096
bna-r.1
for
106421383
bna-r.1
for
106415278
bna-r.1
for
106420483
ghi-r.1
for
121203152
ghi-r.1
for
107947962
cit-r.1
for
102610080
gma-u.5
for
100805037
gma-u.5
for
100777225
vvi-u.5
for
100247720
ppo-u.5
for
7457960
mtr-u.5
for
11430689
sly-u.5
for
101256123
sot-r.1
for
102578153
nta-r.1
for
107819874
nta-r.1
for
107822849
osa-u.5
for
4351050
zma-u.5
for
100279745
tae-r.2
for
123176461
tae-r.2
for
123096887
tae-r.2
for
123086193
hvu-r.1
for
123448398
sbi-r.1
for
8070177
bdi-r.1
for
100835769
cre-r.1
for
CHLRE_16g673617v5


Ortholog ID: 8521
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol APG3 LOC103862767 LOC103842096 LOC106421383 LOC106420483 LOC106444883 LOC121203152 LOC107947962 LOC102610080 LOC100805037 LOC100777225 LOC100247720 LOC7457960 LOC11430689 LOC101256123 LOC102578153 LOC107819874 LOC107822849 LOC4351050 LOC100279745 LOC123176461 LOC123096887 LOC123086193 LOC123448398 LOC8070177 LOC100835769 CHLRE_16g673617v5
Function* Peptide chain release factor 1 peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic-like peptide chain release factor APG3, chloroplastic-like peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic uncharacterized LOC100279745 peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 3
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 8
bna03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma00740 Riboflavin metabolism 2
gma01240 Biosynthesis of cofactors 2
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
mtr03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03060 Protein export 3
sly00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
sot03060 Protein export 2
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 5
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 5
tae00906 Carotenoid biosynthesis 3
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 3
bdi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825466 103862767 103842096 106421383 106420483 106444883 121203152 107947962 102610080 100805037 100777225 100247720 7457960 11430689 101256123 102578153 107819874 107822849 4351050 100279745 123176461 123096887 123086193 123448398 8070177 100835769 5721375
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