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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT4G04940   transducin family protein / WD-40 repeat family protein 
 ath-r.7   AT4G04940   transducin family protein / WD-40 repeat family protein 
 ath-m.9   AT4G04940   transducin family protein / WD-40 repeat family protein 
 ath-e.2   AT4G04940   transducin family protein / WD-40 repeat family protein 
 ath-m.4.bio   AT4G04940   transducin family protein / WD-40 repeat family protein 
 ath-m.4.hor   AT4G04940   transducin family protein / WD-40 repeat family protein 
 ath-m.4.lig   AT4G04940   transducin family protein / WD-40 repeat family protein 
 ath-m.4.str   AT4G04940   transducin family protein / WD-40 repeat family protein 
 ath-m.4.tis   AT4G04940   transducin family protein / WD-40 repeat family protein 
 gma-u.5   100798946   WD repeat-containing protein 36 
 gma-u.5   100795420   WD repeat-containing protein 36 
 vvi-u.5   100266615   U3 small nucleolar RNA-associated protein 21 homolog 
 ppo-u.5   7487225   U3 small nucleolar RNA-associated protein 21 homolog 
 mtr-u.5   25497027   U3 small nucleolar RNA-associated protein 21 homolog 
 sly-u.5   101254131   uncharacterized LOC101254131 
 osa-u.5   9270402   U3 small nucleolar RNA-associated protein 21 homolog 
 zma-u.5   100280230   transducin family protein / WD-40 repeat family protein 

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Top 50 coexpressed genes to AT4G04940 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G04940 (ath-u.5 coexpression data)

CoexMap"825833"


athAT4G04940 | Entrez gene ID : 825833      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 9 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
GO BP
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001329322.1 [sequence] [blastp]
NP_567275.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for NP_001329322.1)
chlo 9,  nucl 1  (predict for NP_567275.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001329322.1)
other 6  (predict for NP_567275.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT4G04940

.
ath-r.7
for
AT4G04940

.
ath-m.9
for
AT4G04940

.
ath-e.2
for
AT4G04940

.
ath-m.4.bio
for
AT4G04940

.
ath-m.4.hor
for
AT4G04940

.
ath-m.4.lig
for
AT4G04940

.
ath-m.4.str
for
AT4G04940

.
ath-m.4.tis
for
AT4G04940

.
gma-u.5
for
100798946

.
gma-u.5
for
100795420

.
vvi-u.5
for
100266615

.
ppo-u.5
for
7487225

.
mtr-u.5
for
25497027

.
sly-u.5
for
101254131

.
osa-u.5
for
9270402

.
zma-u.5
for
100280230

.


Ortholog ID: 10167
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT4G04940 LOC100795420 LOC100798946 LOC101254131 LOC9270402 LOC100280230 LOC103858678 LOC100266615 LOC7487225 LOC25497027 LOC123160596 LOC123164973 LOC123409890 LOC121204867 LOC107926233 LOC106438744 LOC106410441 CHLRE_10g466250v5 LOC8058405 LOC102578407 LOC102623825 LOC100833468 LOC142176321 LOC107792024
Function* transducin family protein / WD-40 repeat family protein WD repeat-containing protein 36 WD repeat-containing protein 36 uncharacterized LOC101254131 U3 small nucleolar RNA-associated protein 21 homolog transducin family protein / WD-40 repeat family protein U3 small nucleolar RNA-associated protein 21 homolog U3 small nucleolar RNA-associated protein 21 homolog U3 small nucleolar RNA-associated protein 21 homolog U3 small nucleolar RNA-associated protein 21 homolog U3 small nucleolar RNA-associated protein 21 homolog U3 small nucleolar RNA-associated protein 21 homolog U3 small nucleolar RNA-associated protein 21 homolog WD repeat-containing protein 36 WD repeat-containing protein 36 U3 small nucleolar RNA-associated protein 21 homolog U3 small nucleolar RNA-associated protein 21 homolog uncharacterized protein U3 small nucleolar RNA-associated protein 21 homolog WD repeat-containing protein 36 U3 small nucleolar RNA-associated protein 21 homolog U3 small nucleolar RNA-associated protein 21 homolog U3 small nucleolar RNA-associated protein 21 homolog uncharacterized LOC107792024
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
ath03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 7
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
osa03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
vvi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
hvu03020 RNA polymerase 2
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 7
sot03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 7
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 7
nta03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825833 100795420 100798946 101254131 9270402 100280230 103858678 100266615 7487225 25497027 123160596 123164973 123409890 121204867 107926233 106438744 106410441 5724008 8058405 102578407 102623825 100833468 142176321 107792024
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