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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT4G16430   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-r.7   AT4G16430   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.9   AT4G16430   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-e.2   AT4G16430   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.bio   AT4G16430   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.hor   AT4G16430   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.lig   AT4G16430   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.str   AT4G16430   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.tis   AT4G16430   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 gma-u.5   100782107   transcription factor MTB3 
 gma-u.5   100819968   transcription factor MTB3 
 vvi-u.5   100254474   transcription factor bHLH3 
 ppo-u.5   7476894   transcription factor bHLH3 
 ppo-u.5   7479984   transcription factor bHLH3 
 mtr-u.5   25499214   transcription factor bHLH3 
 sly-u.5   101259164   transcription factor MTB3 

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Top 50 coexpressed genes to AT4G16430 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G16430 (ath-u.5 coexpression data)

CoexMap"827337"


athAT4G16430 | Entrez gene ID : 827337      
Species ath gma vvi ppo mtr sly bdi hvu bra cit bna sbi ghi osa sot nta cre tae zma
Paralog 9 2 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010629 [list] [network] negative regulation of gene expression  (323 genes)  IGI  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_193376.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_193376.1)
Subcellular
localization
TargetP
other 8  (predict for NP_193376.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT4G16430
ath-r.7
for
AT4G16430
ath-m.9
for
AT4G16430
ath-e.2
for
AT4G16430
ath-m.4.bio
for
AT4G16430
ath-m.4.hor
for
AT4G16430
ath-m.4.lig
for
AT4G16430
ath-m.4.str
for
AT4G16430
ath-m.4.tis
for
AT4G16430
gma-u.5
for
100782107
gma-u.5
for
100819968
vvi-u.5
for
100254474
ppo-u.5
for
7476894
ppo-u.5
for
7479984
mtr-u.5
for
25499214
sly-u.5
for
101259164


Ortholog ID: 12214
Species ath bra bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta
Symbol AT4G16430 LOC103860848 LOC103869671 LOC125590025 LOC106446414 LOC107924232 LOC107924333 LOC102623941 LOC100819968 LOC100782107 LOC100254474 LOC7476894 LOC7479984 LOC25499214 LOC101259164 LOC102587940 LOC107825517 LOC107781062
Function* basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor bHLH3 transcription factor bHLH3 transcription factor bHLH3-like transcription factor bHLH3 transcription factor bHLH3 transcription factor bHLH3 transcription factor MTB3 transcription factor MTB3 transcription factor MTB3 transcription factor bHLH3 transcription factor bHLH3 transcription factor bHLH3 transcription factor bHLH3 transcription factor MTB3 transcription factor bHLH3 transcription factor MTB3 transcription factor MTB3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 3
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00592 alpha-Linolenic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03015 mRNA surveillance pathway 2
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 2
ppo00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 6
sly04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 8
nta04075 Plant hormone signal transduction 8
nta02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 9
nta04075 Plant hormone signal transduction 9
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827337 103860848 103869671 125590025 106446414 107924232 107924333 102623941 100819968 100782107 100254474 7476894 7479984 25499214 101259164 102587940 107825517 107781062
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