ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT4G01390	TRAF-like family protein
ath-r.7	AT4G01390	TRAF-like family protein
ath-m.9	AT4G01390	TRAF-like family protein
ath-e.2	AT4G01390	TRAF-like family protein
ath-m.4.bio	AT4G01390	TRAF-like family protein
ath-m.4.hor	AT4G01390	TRAF-like family protein
ath-m.4.lig	AT4G01390	TRAF-like family protein
ath-m.4.str	AT4G01390	TRAF-like family protein
ath-m.4.tis	AT4G01390	TRAF-like family protein
ath-u.5	AT5G26260	TRAF-like family protein
ath-u.5	AT5G26280	TRAF-like family protein
gma-u.5	100809118	MATH domain and coiled-coil domain-containing protein At3g58370
vvi-u.5	100265153	MATH domain and coiled-coil domain-containing protein At3g58260
vvi-u.5	100259955	uncharacterized LOC100259955
ppo-u.5	18101265	ubiquitin C-terminal hydrolase 12
mtr-u.5	11443727	BTB/POZ and MATH domain-containing protein 3
mtr-u.5	11436579	uncharacterized LOC11436579

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005576 [list] [network] extracellular region	(3158 genes)	ISM
GO:0005634 [list] [network] nucleus	(10367 genes)	IDA
GO:0005737 [list] [network] cytoplasm	(14000 genes)	IDA

GO MF

Protein

NP_192048.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, chlo 4, nucl 1

(predict for NP_192048.2)

Subcellular
localization
TargetP

other 5, mito 4

(predict for NP_192048.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT4G01390	ath-r.7 for AT4G01390	ath-m.9 for AT4G01390	ath-e.2 for AT4G01390	ath-m.4.bio for AT4G01390	ath-m.4.hor for AT4G01390	ath-m.4.lig for AT4G01390	ath-m.4.str for AT4G01390	ath-m.4.tis for AT4G01390	ath-u.5 for AT5G26260	ath-u.5 for AT5G26280	gma-u.5 for 100809118	vvi-u.5 for 100265153	vvi-u.5 for 100259955	ppo-u.5 for 18101265	mtr-u.5 for 11443727	mtr-u.5 for 11436579

Ortholog

Ortholog ID: 214

Species

ath

bna

cit

vvi

ppo

mtr

sot

nta

cre

Symbol

Function^*

TRAF-like family protein

uncharacterized LOC106379270

ubiquitin C-terminal hydrolase 12-like

uncharacterized LOC100259955

ubiquitin C-terminal hydrolase 12

BTB/POZ and MATH domain-containing protein 3

uncharacterized LOC11436579

uncharacterized LOC102601751

uncharacterized LOC142181684

uncharacterized LOC107764797

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00940	Phenylpropanoid biosynthesis	3
mtr00052	Galactose metabolism	2
mtr00500	Starch and sucrose metabolism	2
mtr00562	Inositol phosphate metabolism	2
mtr04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00053	Ascorbate and aldarate metabolism	2
sot00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00040	Pentose and glucuronate interconversions	2
nta00053	Ascorbate and aldarate metabolism	2
nta00480	Glutathione metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

821002

106379270

127902212

127902215

100259955

18101265

11443727

11436579

102601751

142181684

107764797

66053687

5723583

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT4G01390 (ath-u.5 coexpression data)

Top 50 enrichment test to AT4G01390 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	sly	ghi	osa	sot	nta	cre	tae	zma
Paralog	11	1	2	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT4G01390 (ath-u.5 coexpression data)

Top 50 enrichment test to AT4G01390 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**