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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT4G21520   Transducin/WD40 repeat-like superfamily protein 
 ath-r.7   AT4G21520   Transducin/WD40 repeat-like superfamily protein 
 ath-e.2   AT4G21520   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100810983   telomerase Cajal body protein 1 
 vvi-u.5   100267300   uncharacterized LOC100267300 
 ppo-u.5   7485592   uncharacterized LOC7485592 
 mtr-u.5   11425373   telomerase Cajal body protein 1 
 sly-u.5   101253742   uncharacterized LOC101253742 
 osa-u.5   4334044   uncharacterized LOC4334044 
 zma-u.5   100194389   Transducin/WD40 repeat-like superfamily protein 

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Top 50 coexpressed genes to AT4G21520 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G21520 (ath-u.5 coexpression data)

CoexMap"828237"


athAT4G21520 | Entrez gene ID : 828237      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001328473.1 [sequence] [blastp]
NP_193883.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  chlo 1,  vacu 1  (predict for NP_001328473.1)
nucl 8,  chlo 1  (predict for NP_193883.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001328473.1)
other 8  (predict for NP_193883.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT4G21520

.
ath-r.7
for
AT4G21520

.
ath-e.2
for
AT4G21520

.
gma-u.5
for
100810983

.
vvi-u.5
for
100267300

.
ppo-u.5
for
7485592

.
mtr-u.5
for
11425373

.
sly-u.5
for
101253742

.
osa-u.5
for
4334044

.
zma-u.5
for
100194389

.


Ortholog ID: 9039
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT4G21520 LOC100810983 LOC101253742 LOC4334044 LOC100194389 LOC103859109 LOC100267300 LOC7485592 LOC11425373 LOC123086930 LOC123091048 LOC123447717 LOC107938210 LOC107922889 LOC106375729 LOC106440072 CHLRE_07g326350v5 LOC8060504 LOC102593887 LOC102628189 LOC100835273 LOC107773073 LOC107788521
Function* Transducin/WD40 repeat-like superfamily protein telomerase Cajal body protein 1 uncharacterized LOC101253742 uncharacterized LOC4334044 Transducin/WD40 repeat-like superfamily protein telomerase Cajal body protein 1 uncharacterized LOC100267300 uncharacterized LOC7485592 telomerase Cajal body protein 1 telomerase Cajal body protein 1 telomerase Cajal body protein 1 telomerase Cajal body protein 1 telomerase Cajal body protein 1 telomerase Cajal body protein 1 telomerase Cajal body protein 1-like telomerase Cajal body protein 1 uncharacterized protein telomerase Cajal body protein 1 telomerase Cajal body protein 1 uncharacterized LOC102628189 telomerase Cajal body protein 1 uncharacterized LOC107773073 uncharacterized LOC107788521
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 3
ath03018 RNA degradation 2
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 3
osa03010 Ribosome 2
osa03440 Homologous recombination 2
osa00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00260 Glycine, serine and threonine metabolism 2
zma00261 Monobactam biosynthesis 2
zma00270 Cysteine and methionine metabolism 2
zma00300 Lysine biosynthesis 2
zma01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 3
vvi04141 Protein processing in endoplasmic reticulum 3
vvi03018 RNA degradation 2
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03460 Fanconi anemia pathway 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 5
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 3
cit00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 2
nta00460 Cyanoamino acid metabolism 2
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta00670 One carbon pool by folate 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 2
nta00460 Cyanoamino acid metabolism 2
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta00670 One carbon pool by folate 2
nta01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828237 100810983 101253742 4334044 100194389 103859109 100267300 7485592 11425373 123086930 123091048 123447717 107938210 107922889 106375729 106440072 5716249 8060504 102593887 102628189 100835273 107773073 107788521
The preparation time of this page was 2.2 [sec].