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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AMY1   alpha-amylase-like protein 
 ath-r.7   AMY1   alpha-amylase-like protein 
 ath-m.9   AMY1   alpha-amylase-like protein 
 ath-e.2   AMY1   alpha-amylase-like protein 
 ath-m.4.bio   AMY1   alpha-amylase-like protein 
 ath-m.4.hor   AMY1   alpha-amylase-like protein 
 ath-m.4.lig   AMY1   alpha-amylase-like protein 
 ath-m.4.str   AMY1   alpha-amylase-like protein 
 ath-m.4.tis   AMY1   alpha-amylase-like protein 
 bra-r.6   103871863   alpha-amylase 1 
 bna-r.1   111202328   alpha-amylase 1-like 
 bna-r.1   106369186   alpha-amylase 1 
 ghi-r.1   107958116   alpha-amylase 
 ghi-r.1   107921118   alpha-amylase 
 cit-r.1   102612446   alpha-amylase 
 gma-u.5   100815664   alpha-amylase-like 
 vvi-u.5   100250317   alpha-amylase 
 vvi-u.5   100245165   alpha-amylase 
 ppo-u.5   18109585   alpha-amylase 
 mtr-u.5   11419190   alpha-amylase 
 sly-u.5   101254788   alpha-amylase 
 sly-u.5   101254670   alpha-amylase 
 sot-r.1   102582328   alpha-amylase-like 
 sot-r.1   102598863   alpha-amylase 
 nta-r.1   107783940   alpha-amylase 
 nta-r.1   107826644   alpha-amylase-like 
 osa-u.5   4345814   alpha-amylase isozyme 3D-like 
 zma-u.5   100273029   Alpha-amylase 1 
 zma-u.5   100383492   putative alpha-amylase family protein 
 zma-u.5   100283908   alpha-amylase 
 tae-r.2   123138462   alpha-amylase type B isozyme 
 tae-r.2   123138460   alpha-amylase type B isozyme 
 tae-r.2   123138358   alpha-amylase type B isozyme 
 bdi-r.1   100830032   alpha-amylase type B isozyme 
 bdi-r.1   100835083   alpha-amylase type A isozyme 
 bdi-r.1   100845943   alpha-amylase isozyme 3A 
 cre-r.1   CHLRE_08g385500v5   uncharacterized protein 
 cre-r.1   CHLRE_08g384750v5   uncharacterized protein 

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Top 50 coexpressed genes to AMY1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AMY1 (ath-u.5 coexpression data)

CoexMap"828603"


athAMY1 | Entrez gene ID : 828603      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae bdi cre hvu sbi
Paralog 9 1 2 2 1 1 2 1 1 2 2 2 1 3 3 3 2 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00500 [list] [network] Starch and sucrose metabolism (172 genes)
GO BP
GO:0009739 [list] [network] response to gibberellin  (125 genes)  IEP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IEP  
GO CC
GO:0048046 [list] [network] apoplast  (340 genes)  IDA  
GO:0005576 [list] [network] extracellular region  (3158 genes)  ISM TAS  
GO MF
GO:0004556 [list] [network] alpha-amylase activity  (2 genes)  IMP  
Protein NP_567714.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  extr 2,  E.R. 2,  vacu 1,  cyto_E.R. 1  (predict for NP_567714.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_567714.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AMY1
ath-r.7
for
AMY1
ath-m.9
for
AMY1
ath-e.2
for
AMY1
ath-m.4.bio
for
AMY1
ath-m.4.hor
for
AMY1
ath-m.4.lig
for
AMY1
ath-m.4.str
for
AMY1
ath-m.4.tis
for
AMY1
bra-r.6
for
103871863
bna-r.1
for
111202328
bna-r.1
for
106369186
ghi-r.1
for
107958116
ghi-r.1
for
107921118
cit-r.1
for
102612446
gma-u.5
for
100815664
vvi-u.5
for
100250317
vvi-u.5
for
100245165
ppo-u.5
for
18109585
mtr-u.5
for
11419190
sly-u.5
for
101254788
sly-u.5
for
101254670
sot-r.1
for
102582328
sot-r.1
for
102598863
nta-r.1
for
107783940
nta-r.1
for
107826644
osa-u.5
for
4345814
zma-u.5
for
100273029
zma-u.5
for
100383492
zma-u.5
for
100283908
tae-r.2
for
123138462
tae-r.2
for
123138460
tae-r.2
for
123138358
bdi-r.1
for
100830032
bdi-r.1
for
100835083
bdi-r.1
for
100845943
cre-r.1
for
CHLRE_08g385500v5
cre-r.1
for
CHLRE_08g384750v5


Ortholog ID: 1322
Species ath bra bna bna ghi ghi ghi cit gma vvi vvi ppo mtr sly sly sot sot nta nta osa osa osa zma zma zma tae tae tae hvu bdi bdi bdi cre cre
Symbol AMY1 LOC103871863 LOC111202328 LOC106369186 LOC107958116 LOC107916876 LOC107905564 LOC102612446 LOC100815664 LOC100250317 LOC100245165 LOC18109585 LOC11419190 LOC101254788 LOC101254670 LOC102582328 LOC102598863 LOC107783940 LOC107826644 LOC4342055 LOC4330832 LOC4330830 LOC100383492 LOC100283908 LOC542522 LOC123128588 LOC123112201 LOC123164937 LOC123411983 LOC100830032 LOC100835083 LOC100845943 CHLRE_08g385500v5 CHLRE_08g384750v5
Function* alpha-amylase-like protein alpha-amylase 1 alpha-amylase 1-like alpha-amylase 1 alpha-amylase alpha-amylase alpha-amylase alpha-amylase alpha-amylase-like alpha-amylase alpha-amylase alpha-amylase alpha-amylase alpha-amylase alpha-amylase alpha-amylase-like alpha-amylase alpha-amylase alpha-amylase-like alpha-amylase isozyme 2A-like alpha-amylase-like alpha-amylase-like putative alpha-amylase family protein alpha-amylase alpha-amylase alpha-amylase type B isozyme alpha-amylase isozyme 3A alpha-amylase type A isozyme alpha-amylase type A isozyme alpha-amylase type B isozyme alpha-amylase type A isozyme alpha-amylase isozyme 3A uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 5
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
bna00500 Starch and sucrose metabolism 2
bna00511 Other glycan degradation 2
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
bna00511 Other glycan degradation 2
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00640 Propanoate metabolism 4
ghi00630 Glyoxylate and dicarboxylate metabolism 4
ghi01200 Carbon metabolism 4
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 3
ghi00020 Citrate cycle (TCA cycle) 2
ghi00270 Cysteine and methionine metabolism 2
ghi00566 Sulfoquinovose metabolism 2
ghi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00640 Propanoate metabolism 4
ghi00630 Glyoxylate and dicarboxylate metabolism 4
ghi01200 Carbon metabolism 4
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00260 Glycine, serine and threonine metabolism 2
gma00350 Tyrosine metabolism 2
gma00360 Phenylalanine metabolism 2
gma00410 beta-Alanine metabolism 2
gma00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00940 Phenylpropanoid biosynthesis 2
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 4
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00430 Taurine and hypotaurine metabolism 3
mtr00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00520 Amino sugar and nucleotide sugar metabolism 3
osa00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00500 Starch and sucrose metabolism 4
osa00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 7
tae00052 Galactose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00280 Valine, leucine and isoleucine degradation 4
hvu00640 Propanoate metabolism 3
hvu00785 Lipoic acid metabolism 3
hvu01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
bdi04626 Plant-pathogen interaction 2
bdi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00500 Starch and sucrose metabolism 2
bdi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00592 alpha-Linolenic acid metabolism 6
cre00071 Fatty acid degradation 5
cre01212 Fatty acid metabolism 5
cre01040 Biosynthesis of unsaturated fatty acids 4
cre01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00500 Starch and sucrose metabolism 4
cre01200 Carbon metabolism 3
cre01230 Biosynthesis of amino acids 2
cre00030 Pentose phosphate pathway 2
cre00480 Glutathione metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828603 103871863 111202328 106369186 107958116 107916876 107905564 102612446 100815664 100250317 100245165 18109585 11419190 101254788 101254670 102582328 102598863 107783940 107826644 4342055 4330832 4330830 100383492 100283908 542522 123128588 123112201 123164937 123411983 100830032 100835083 100845943 5719788 5719803
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