ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	AT4G32440	Plant Tudor-like RNA-binding protein
ath-r.7	AT4G32440	Plant Tudor-like RNA-binding protein
ath-m.9	AT4G32440	Plant Tudor-like RNA-binding protein
ath-e.2	AT4G32440	Plant Tudor-like RNA-binding protein
ath-m.4.bio	AT4G32440	Plant Tudor-like RNA-binding protein
ath-m.4.hor	AT4G32440	Plant Tudor-like RNA-binding protein
ath-m.4.lig	AT4G32440	Plant Tudor-like RNA-binding protein
ath-m.4.str	AT4G32440	Plant Tudor-like RNA-binding protein
ath-m.4.tis	AT4G32440	Plant Tudor-like RNA-binding protein
ath-u.5	AT2G25590	Plant Tudor-like protein
ath-u.5	AT5G20030	Plant Tudor-like RNA-binding protein
gma-u.5	100812171	uncharacterized LOC100812171
gma-u.5	100800837	uncharacterized LOC100800837
gma-u.5	100795963	uncharacterized LOC100795963
vvi-u.5	100267997	uncharacterized LOC100267997
vvi-u.5	100264564	uncharacterized LOC100264564
ppo-u.5	7459014	protein AGENET DOMAIN (AGD)-CONTAINING P1
ppo-u.5	7490968	DUF724 domain-containing protein 1
ppo-u.5	7495761	uncharacterized LOC7495761
mtr-u.5	11436071	uncharacterized LOC11436071
mtr-u.5	11441618	uncharacterized LOC11441618
sly-u.5	101262920	uncharacterized LOC101262920
sly-u.5	101249876	uncharacterized LOC101249876
osa-u.5	4341451	uncharacterized LOC4341451
osa-u.5	9266462	DUF724 domain-containing protein 3
zma-u.5	103629786	Plant Tudor-like RNA-binding protein
zma-u.5	100193920	uncharacterized LOC100193920

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_001190890.1 [sequence] [blastp]
NP_194970.1 [sequence] [blastp]
NP_974660.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, mito 3, nucl 2, cyto_mito 2	(predict for NP_001190890.1)
nucl 7, chlo 1, mito 1, chlo_mito 1	(predict for NP_194970.1)
nucl 6, chlo 1, mito 1, chlo_mito 1	(predict for NP_974660.1)

Subcellular
localization
TargetP

mito 5, other 4	(predict for NP_001190890.1)
mito 5, other 4	(predict for NP_194970.1)
mito 5, other 4	(predict for NP_974660.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT4G32440	ath-r.7 for AT4G32440	ath-m.9 for AT4G32440	ath-e.2 for AT4G32440	ath-m.4.bio for AT4G32440	ath-m.4.hor for AT4G32440	ath-m.4.lig for AT4G32440	ath-m.4.str for AT4G32440	ath-m.4.tis for AT4G32440	ath-u.5 for AT2G25590	ath-u.5 for AT5G20030	gma-u.5 for 100812171	gma-u.5 for 100800837	gma-u.5 for 100795963	vvi-u.5 for 100267997	vvi-u.5 for 100264564	ppo-u.5 for 7459014	ppo-u.5 for 7490968	ppo-u.5 for 7495761	mtr-u.5 for 11436071	mtr-u.5 for 11441618	sly-u.5 for 101262920	sly-u.5 for 101249876	osa-u.5 for 4341451	osa-u.5 for 9266462	zma-u.5 for 103629786	zma-u.5 for 100193920

Ortholog

Ortholog ID: 2534

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

Plant Tudor-like RNA-binding protein

uncharacterized LOC103856412

uncharacterized LOC103851318

uncharacterized LOC106386724

uncharacterized LOC106361140

DUF724 domain-containing protein 7

uncharacterized LOC107962632

uncharacterized LOC102609023

uncharacterized LOC100795963

uncharacterized LOC100809539

uncharacterized LOC100264564

uncharacterized LOC100267997

uncharacterized LOC7495761

DUF724 domain-containing protein 1

uncharacterized LOC11436071

uncharacterized LOC11441618

uncharacterized LOC101262920

uncharacterized LOC101249876

uncharacterized LOC102595390

uncharacterized LOC102579948

uncharacterized LOC107822850

uncharacterized LOC142161704

DUF724 domain-containing protein 3

uncharacterized LOC4341451

uncharacterized LOC100193920

Plant Tudor-like RNA-binding protein

uncharacterized LOC123136902

uncharacterized LOC123144348

uncharacterized LOC123402852

uncharacterized LOC110430992

uncharacterized LOC100824607

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04136	Autophagy - other	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00280	Valine, leucine and isoleucine degradation	2
gma00650	Butanoate metabolism	2
gma04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04136	Autophagy - other	2
vvi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	4
mtr04626	Plant-pathogen interaction	4
mtr04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00770	Pantothenate and CoA biosynthesis	3
nta01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04146	Peroxisome	2
tae03015	mRNA surveillance pathway	2
tae04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04146	Peroxisome	2
tae03015	mRNA surveillance pathway	2
tae04382	Cornified envelope formation	2

Expression

Expression pattern

Entrez Gene ID^*

832125

829379

103856412

103851318

106386724

106361140

121202948

107962632

102609023

100795963

100809539

100264564

100267997

7495761

7490968

11436071

11441618

101262920

101249876

102595390

102579948

107822850

142161704

9266462

4341451

100193920

103629786

123136902

123144348

123402852

110430992

100824607

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT4G32440 (ath-u.5 coexpression data)

Top 50 enrichment test to AT4G32440 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	11	3	2	3	2	2	2	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT4G32440 (ath-u.5 coexpression data)

Top 50 enrichment test to AT4G32440 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**